Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00185 ATGAATTCAGCATCCCCACAGTTCGTTTCCTCGAGAAGGATGAGTGTGTACGATCCAATCCACCAGATTAGTATGTGGGGAGAAGGCTTCAAAAGTAATGGTAATTTAAGTGCATCCATGCCTTTAATTGATGAGGCAGACATGAAGTTAGACAGTCAGTCAGAGGATGCTTCTCATGGTATACTGGGAGCACCTAATAAGTATGACCAAGAAGCTAACAAACCTACTGATAAGATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGCCGTTTGAGGAAAAAGGCCTATGTGCAGCAGTTAGAATCAAGTCGTTTGAAGTTGATGCAGTTGGAGCAAGAGCTCGAACGTGCAAGACAGCAGGGAATGTACATAGGTGGTGGGTTGGACTCTAATCATCTGGGTTTTGCTGGATCGAATATCATATTTGCAGGAATTACAACCTTTGAGATGGAGTACGGACACTGGGTGAACGAGCAAAATAGGCAAATCACAGAACTGAGAACTGCTTTAAATGCTCATATTGGTGACTTAGAGCTCAGGATTCTGGTAGATGGTATGATGAACCACTACGCTGAAATCTTTCGCATGAAATCTGCAGCTGCAAAAGCAGATGTGTTCTATGTCATGTCTGGTATGTGGAAAACAACAGCTGAAAGATTCTTCCTGTGGATTGGAGGGTTTCGCCCCTCTGAGCTTCTAAAGGTTCTTGGCCCCCTGATTGAACCCCTCACAGAGCAACAGCGGTTGGATATCTATAACCTTGGACAATCATGTCAACAAGCAGAAGATGCCCTATCACAAGGTATGGACAAACTCCGGCAAACACTTGCTGATAGTGTAGCAGCTGGACAGTTCATGGAAGGAACGTATATTCCACAGATGACTTCTGCAATGGAGAAGTTGGAAGCTCTGGTGAGCTTTGTGAACCAGGCTGACCATCTTCGGCAGGAAACCTTGCAGCAAATGTCTCGAATACTTACAATCCGTCAGGCAGCTCGATGCTTGCTTGCTTTAGGGGAATATTTCCAACGCCTGAGGGCTTTGAGCTCACTGTGGTCTAACAGACCCCGTGAACCTGCTTAG 1095 0.4548 MNSASPQFVSSRRMSVYDPIHQISMWGEGFKSNGNLSASMPLIDEADMKLDSQSEDASHGILGAPNKYDQEANKPTDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELERARQQGMYIGGGLDSNHLGFAGSNIIFAGITTFEMEYGHWVNEQNRQITELRTALNAHIGDLELRILVDGMMNHYAEIFRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLGPLIEPLTEQQRLDIYNLGQSCQQAEDALSQGMDKLRQTLADSVAAGQFMEGTYIPQMTSAMEKLEALVSFVNQADHLRQETLQQMSRILTIRQAARCLLALGEYFQRLRALSSLWSNRPREPA* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00185 364 Pfam Seed dormancy control 166 240 IPR025422 GO:0006351|GO:0043565
Lapu6g00185 364 PANTHER TRANSCRIPTION FACTOR TGA9 2 362 - -
Lapu6g00185 364 FunFam BZIP family transcription factor 77 126 - -
Lapu6g00185 364 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Lapu6g00185 364 Gene3D - 77 126 - -
Lapu6g00185 364 CDD bZIP_HBP1b-like 78 130 - -
Lapu6g00185 364 SMART brlzneu 74 134 IPR004827 GO:0003700|GO:0006355
Lapu6g00185 364 SUPERFAMILY Leucine zipper domain 78 120 IPR046347 GO:0003700|GO:0006355
Lapu6g00185 364 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 120 IPR004827 GO:0003700|GO:0006355
Lapu6g00185 364 ProSiteProfiles DOG1 domain profile. 149 359 IPR025422 GO:0006351|GO:0043565
Lapu6g00185 364 Coils Coil 97 124 - -
Lapu6g00185 364 Pfam bZIP transcription factor 76 112 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00185 Lapu-Chr6 1568247 1573742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00185 1 364 Calmodulin-binding Proteins AT5G10030 70.219 0.0 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lapu6g00185 DOG1 3.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00185 K14431 - gmx:100793353 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00185 6 1568247 1573742 Lapu6g00185 6 1568247 1573742 ECH