Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00183 ATGAAGCCTCTCACAAAGCTCTTTCACAAGCTTTGTGGCAAAATCATAATCCTATTAGCATCCCTGATAATAGAGCTTATCATTCTCATTCAGAAACTAAAATCATCGTCACGGCCAATCAGCACCCACCAATACCTCAAATTCATCGAGAAGAACAACCCCACGATTTGCTACACCAAGAGATTGTTGAAGGCAGAACAGGGTGGTGGTGCAGAGTGTAGAGTATGCTTGTGCGAATTGGAGGAAGGGGAGAAGGTGAGGAAGTTGCAATGCCATCACATGTTTCATAGGGATTGTCTGGACAAGTGGTTGCAACAATATTGGGCTACGTGCCCTCTCTGTAGGAAACAGGTGGTGCCGCATGATGTTGTGTCCAAGCACCGTCAGCATCAGAATCAAGCAGAGGATGGGAATCATGATGACCACCTTCCCTATTTTTTATCAGCATTTCGTCGTGGCAACACTTTGCATAGATATTTCTGA 483 0.4493 MKPLTKLFHKLCGKIIILLASLIIELIILIQKLKSSSRPISTHQYLKFIEKNNPTICYTKRLLKAEQGGGAECRVCLCELEEGEKVRKLQCHHMFHRDCLDKWLQQYWATCPLCRKQVVPHDVVSKHRQHQNQAEDGNHDDHLPYFLSAFRRGNTLHRYF* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00183 160 SMART ring_2 73 114 IPR001841 -
Lapu6g00183 160 ProSiteProfiles Zinc finger RING-type profile. 73 115 IPR001841 -
Lapu6g00183 160 PANTHER - 1 155 - -
Lapu6g00183 160 Pfam Ring finger domain 72 115 IPR001841 -
Lapu6g00183 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 121 IPR013083 -
Lapu6g00183 160 SUPERFAMILY RING/U-box 51 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00183 Lapu-Chr6 1538829 1539990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00183 71 129 C3H Transcription Factor Family AT1G15100 54.237 1.65e-18 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00183 K16282 - gmx:102661897 212.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03348 3 56773244 56775156 Lapu6g00183 6 1538829 1539990 PCT