Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00169 ATGACAACAGTTATGGACACTTACAATGACAGTAGCATCATGCTATCAGATTTCTTCCACCCCTGTAATGATCAAGAGCTGATGAAAGCACTTGAACCTTTTATGAAAACTCATTCATCCACCACTTCCTCAATAACTTACCCTTCCTTATCTTCTCCAAACTTCTCCTCAAGCTATGACCAAAAGCCTCTAAACCAACCCACTTCCATCAAACTCAACCAACTCACCCCATCTCAAACATTCCAGATTCAAGCCCAAATCCAGGTCACACGAGCCCAGTTTTTTAGCCCGAAGCCCGTTCCCATGAAGCAGGTGGGTGGTCGTGTTCTTTCGAAGCCCACAAAGCTTTACCGTGGGGTGAGGCAGAGACACTGGGGCAAGTGGGTGGCTGAGATCAGACTCCCCAAGAATCGCACTCGTCTCTGGCTTGGTACATTCGAAACCGCTGAAGAAGCAGCCCTGGCATACGACAACGCAGCGTTTAAGCTGAGAGGAGAAAACGCGAGGCTCAACTTCCCTCATCTACGTCACCATGGAACAAGTGTCTATGGTGAGTTTGGGACCTACAAGCCTCTCCCTTCTGCAGTGGACGCCAAGCTCCAAGCCATTTGTCAAAGCTTGGCCCTCAATACACACAAGGAAGAAACGACAACAACAATAACAACATCGGAGTTTGAGGATGTTAAGGTGGGGAACCAAACAGCATCCTCGCCCTTGTCAGATGAATATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTGGTTCCAATTCACCTGAATCCGATATTACTTTCTTGGATTTCTCGGATTCTTATGAAGCAGTGGACAATCTTGGGTTGGACTTGGAGAAGTACCCTTCGGTGGAGATTGATTGGGCAGCTTTGTCTGAATCATGA 897 0.4705 MTTVMDTYNDSSIMLSDFFHPCNDQELMKALEPFMKTHSSTTSSITYPSLSSPNFSSSYDQKPLNQPTSIKLNQLTPSQTFQIQAQIQVTRAQFFSPKPVPMKQVGGRVLSKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEEAALAYDNAAFKLRGENARLNFPHLRHHGTSVYGEFGTYKPLPSAVDAKLQAICQSLALNTHKEETTTTITTSEFEDVKVGNQTASSPLSDEYSSSSSSSSSSAGSNSPESDITFLDFSDSYEAVDNLGLDLEKYPSVEIDWAALSES* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00169 298 MobiDBLite consensus disorder prediction 218 260 - -
Lapu6g00169 298 SMART rav1_2 116 179 IPR001471 GO:0003700|GO:0006355
Lapu6g00169 298 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700|GO:0006355
Lapu6g00169 298 Gene3D AP2/ERF domain 116 175 IPR036955 GO:0003700|GO:0006355
Lapu6g00169 298 CDD AP2 115 175 IPR001471 GO:0003700|GO:0006355
Lapu6g00169 298 Pfam AP2 domain 117 166 IPR001471 GO:0003700|GO:0006355
Lapu6g00169 298 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Lapu6g00169 298 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Lapu6g00169 298 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 5 296 - -
Lapu6g00169 298 SUPERFAMILY DNA-binding domain 116 174 IPR016177 GO:0003677
Lapu6g00169 298 FunFam Ethylene-responsive transcription factor 2 115 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00169 Lapu-Chr6 1397126 1398592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00169 17 297 AP2-EREBP Transcription Factor Family AT4G39780 50.171 5.93e-76 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu6g00169 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00169 K09286 - gmx:106796800 386.726