Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00168 ATGACGCAGCAGAATGTGGTAGTGTCTGACACCAAATCTGGAGTTTCCCTAACAGTTTTTCCATCTCCTGCACAAAAAAAGCCACCACCAGCACCAGGAGGCTACATTTCCATTTCAAGGAGGAGGGTTTTGAAGAACCTTGAAATCAATGGAGACCAAAGAATCAACGCATGGGTTGAGTCCATGAGAGCCTCATCTCCTACCCATCTTAAATCCACACCTTCTTTGTCTCAGGAGCATAACTCTTGGATTCTTCACCATCCGTCGGCATTAGACATGTTTGACCAAATTATTGACGCGTCAAAGGGAAAACAAATTGTCATGTTTCTGGACTATGATGGCACACTGTCCCCAATAGTGGAAGATCCTGACCGTGCTTTCATGTCTCATTCGATGAGAAAAACAGTGAGGAAACTTGCTAGGTGTTTTCCTACTGCCATAGTGACTGGAAGATGCAAAGACAAGGTTTACAATTTTGTCCAGTTGGCAGAGCTATATTATGCAGGAAGTCATGGCATGGATATTAAAGGGCCAACAAGAAGCTCCAAATACAACAAAGATAGCAAAGCTGAGGCAATTCTTTTTCAACCTGCCAGCGATTTTCTTCCCATGATAGATGAGGTGTACCAACAGTTGGTTGAGAAGACAAAATCAACTCCTGGGGCCATGGTTGAGAACAACAAGTTCTGCCTCTCTGTTCATTTTCGTTGTGTTGATGAAAAGAAATGGAGTGACCTGGCACGCCAAGTGAAATCAGTTTTAAAGGAGTACCCAAAGCTGCGACTTACCCAAGGAAGAAAGGTGCTAGAGATTCGTCCCACTATTAAATGGGACAAAGGGAAGGCCCTGGAATTTTTATTAGAGTCCCTTGGTTTGGCCAATTGTAGTGATGTCTTTCCAGTTTATATCGGCGATGATCGATCCGATGAAGATGCTTTTAAGAAATTGAGAGACAGAGGACAAGGCTTTGGCATTCTTGTCTCCAAATTTCCAAAAGACACAAGTGCATCTTACTCTTTACAAGAACCAAACGAGGTGATGAACTTTCTTCAACGCTTGGTTGAGTGGAAACATATGTCCCAACGAGCACGTTCCCGCGTGTAA 1104 0.4348 MTQQNVVVSDTKSGVSLTVFPSPAQKKPPPAPGGYISISRRRVLKNLEINGDQRINAWVESMRASSPTHLKSTPSLSQEHNSWILHHPSALDMFDQIIDASKGKQIVMFLDYDGTLSPIVEDPDRAFMSHSMRKTVRKLARCFPTAIVTGRCKDKVYNFVQLAELYYAGSHGMDIKGPTRSSKYNKDSKAEAILFQPASDFLPMIDEVYQQLVEKTKSTPGAMVENNKFCLSVHFRCVDEKKWSDLARQVKSVLKEYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGLANCSDVFPVYIGDDRSDEDAFKKLRDRGQGFGILVSKFPKDTSASYSLQEPNEVMNFLQRLVEWKHMSQRARSRV* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00168 367 CDD HAD_TPP 107 348 - -
Lapu6g00168 367 Pfam Trehalose-phosphatase 109 343 IPR003337 GO:0003824|GO:0005992
Lapu6g00168 367 FunFam Trehalose 6-phosphate phosphatase 204 363 - -
Lapu6g00168 367 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 29 362 IPR044651 GO:0004805|GO:0005992
Lapu6g00168 367 NCBIfam trehalose-phosphatase 104 354 IPR003337 GO:0003824|GO:0005992
Lapu6g00168 367 NCBIfam HAD-IIB family hydrolase 108 319 IPR006379 -
Lapu6g00168 367 Gene3D - 106 198 IPR023214 -
Lapu6g00168 367 Gene3D - 205 366 IPR023214 -
Lapu6g00168 367 FunFam Trehalose 6-phosphate phosphatase 106 193 - -
Lapu6g00168 367 SUPERFAMILY HAD-like 107 356 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00168 Lapu-Chr6 1379437 1381898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00168 108 353 Trehalose Biosynthesis Gene Families AT1G60140 28.947 6.18e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00168 K01087 - gmx:100794430 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00168 6 1379437 1381898 Lapu6g00168 6 1379437 1381898 ECH