Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00156 ATGTCCAATTCCAACTCCAACCCAAACGCAGATCCGACCCTAAATTTTAACTCCCAGGATCCCAATACAACTGCAAACCCTCAGCTTCCGCTTAAGAACCTCTCCCAGGTTCGGACCAGAATTGATTCTCTACAACACTTCCTATCTCAATCCATCAACACCAACACTCCTCTCACCACCGATCAAATCGCCATGGTCTCCACCCACATCATCTCTTCCATCCACCAAATCATCGTCAACGGCGCCGCCCTCGTAACTTACTCCCAACATTCCACCCCCGCCGTCGCACCAGATGCGTCGTTGTATCCGAAGCCAGAACCCTCCGCCACCGATAAACACAAACACCTATTCGATTCCAAACTCGAACCACCCGAGGAGGACGACGGCATCGAAGACGACATCGTCGATTGCGAAATCGTGGAGCTCGATGCCGTGGAACTCCTCGCCGAGCACATCCACTTCTGCGAGATCTGCGGGAAAGGCTTCCGGCGCGACGCAAACCTCCGCATGCACATGCGCGCGCACGGGGACCAGTTCAAGACTCCGGAGGCGCTGGCGAGGCCGTCGGAAACTGGCGCACCGCGCCGCGCGATGCGGTTCTCTTGCCCGTTCGAAGGCTGCAACCGGAACAAGCTCCACCGGCGGTTCCGGCCGCTAAAGTCGGCGGTATGCTTGAAGAACCACTTCAAGCGGAGCCACTGTCCGAAGATGTACTCGTGCACGCGGTGCCACAAGAAGCACTTCTCGGTGCTCTCGGATTTGAAGAGCCACGCGAAGCACTGCGGAGAGTGCAGATGGAAGTGCACGTGCGGGACCACGTTCTCGAGGAAGGACAAGTTGTTCGGCCACATTGCGCTGTTTGAGGGCCACGCGCCTGCGCTCGCGTGCGACGAAGAGGATAAAGGGAAGCAAGTGGTGGAGGGTGATGACGAAAATCCAATGTTGACGACTGAAAGTGGATTTGAACTGGGTAATTGCTTTGGGGATGAAGAGTTGCCTGAAGGGTTTTTTGATGATTTTGGTTCCATTGATGACTACTGTTTAAGGGAAGTGTTAGGGTTTCCCAGTAATTAA 1074 0.5503 MSNSNSNPNADPTLNFNSQDPNTTANPQLPLKNLSQVRTRIDSLQHFLSQSINTNTPLTTDQIAMVSTHIISSIHQIIVNGAALVTYSQHSTPAVAPDASLYPKPEPSATDKHKHLFDSKLEPPEEDDGIEDDIVDCEIVELDAVELLAEHIHFCEICGKGFRRDANLRMHMRAHGDQFKTPEALARPSETGAPRRAMRFSCPFEGCNRNKLHRRFRPLKSAVCLKNHFKRSHCPKMYSCTRCHKKHFSVLSDLKSHAKHCGECRWKCTCGTTFSRKDKLFGHIALFEGHAPALACDEEDKGKQVVEGDDENPMLTTESGFELGNCFGDEELPEGFFDDFGSIDDYCLREVLGFPSN* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00156 357 MobiDBLite consensus disorder prediction 107 123 - -
Lapu6g00156 357 ProSitePatterns Zinc finger C2H2 type domain signature. 155 175 IPR013087 -
Lapu6g00156 357 Gene3D Classic Zinc Finger 153 176 - -
Lapu6g00156 357 FunFam Zinc finger 45-like 150 176 - -
Lapu6g00156 357 MobiDBLite consensus disorder prediction 94 128 - -
Lapu6g00156 357 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 18 95 IPR044300 GO:0010044|GO:0010447
Lapu6g00156 357 SUPERFAMILY beta-beta-alpha zinc fingers 150 176 IPR036236 -
Lapu6g00156 357 SMART c2h2final6 238 260 IPR013087 -
Lapu6g00156 357 SMART c2h2final6 200 233 IPR013087 -
Lapu6g00156 357 SMART c2h2final6 153 175 IPR013087 -
Lapu6g00156 357 ProSiteProfiles Zinc finger C2H2 type domain profile. 153 180 IPR013087 -
Lapu6g00156 357 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00156 Lapu-Chr6 1259574 1260891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00156 138 325 C2H2 Transcription Factor Family AT1G34370 54.545 1.54e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu6g00156 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00156 - - gmx:100809135 535.413