Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00154 ATGGCCATTTCACCTTTTGCTAGTACATCAGCTACTCAATGGGGAGTTCGTCCTCAGATTTTTGCGGGATCGACTGGGATGGGGAAAATTGCATCATTCAAGAACAATGTTTCTAGCAGGTTAAGCTTCATGGCTGCCCCAAATTCAAGCTTCTTTTCTAGAGATTCCTCGCGTGCACTTTTTGACAAAGGTTCATTGCAAAATTTGCATGGTCGCAGGGGATCGAGGTTGATAGTTAGAGCAGATGCAGATTACTATTCTGTCCTGGGGGTCTCAAAAAATTCTAGTAAATCTGAAATTAAGAGTGCTTATCGGAAGCTTGCCCGGAGTTATCATCCTGATGTGAACAAAGAACCTGATGCAGAAGAGAAATTTAAAGAAATTAGTAATGCGTATGAGGTCTTGTCAGATGATGAGAAAAGATCCATATATGACACATACGGAGAGGCTGGTCTTAAAGGTTCAGGAATGGGCATGGGGGATTTCAGCAATCCTTTTGACCTGTTTGAGACACTGTTTGAGGGCATGGGCGGCATGGGGGGGATGGGGGGCAGCAGGGGTTCTTGGAATGGAGCAGTTGAGGGTGAAGATGAGTATTACAGTCTTGTTTTGAACTTCAAAGAAGCTGTTTTTGGGGTGGAAAAGGAGATTGAGATTCGGAGATTAGAGAGCTGTGGAACTTGCAAGGGTTCAGGGGCTAAACCAGGGACCAAATCATCCAAGTGTAACACTTGTGGTGGTCAGGGTCGGGTTGTTCAATCGACAAGGACTCCACTAGGCATCTTTCAGCAGTCTATGACTTGCTCTTCTTGCAATGGAGCCGGAGAAATTTCAACACCTTGCAATACATGTTCTGGGGAAGGTCGAGTGAGGAAGACAAAGCGGATAAGTATCAAGGTTCCTGCTGGTGTGGATTCTGGCAGCCGGCTAAGGGTCCGAAATGAAGGCAATGCTGGTAGGCGTGGGGGTCCTCCTGGTGATCTCTTTGTCGTTCTTGAAGTTATCCCTGATCCCGTCCTTAAAAGGGATGACACAAACATTTTATACACGTGTAAGATATCTTATATTGATGCAATATTGGGGACTACAGTTAAGGTTCCTACTGTAGATGGCATGGTGGATTTAAAAATCCCAGCTGGGACTCAACCAAGCTCAACACTTGTTATGAATAAGAAAGGTGTTCCCTTGCTGAACAAAAAGAATCTGAGGGGTGATCAATTGGTTAGGGTGCAAGTTGAAATCCCCAAAAAACTGAGCAAAGATGAGAGAAAACTTGTCGAGGAACTTGCTGATTTAAGCAAAGGCAAAACTGCTGCCACCAGTGGCAGGAGATAA 1335 0.4494 MAISPFASTSATQWGVRPQIFAGSTGMGKIASFKNNVSSRLSFMAAPNSSFFSRDSSRALFDKGSLQNLHGRRGSRLIVRADADYYSVLGVSKNSSKSEIKSAYRKLARSYHPDVNKEPDAEEKFKEISNAYEVLSDDEKRSIYDTYGEAGLKGSGMGMGDFSNPFDLFETLFEGMGGMGGMGGSRGSWNGAVEGEDEYYSLVLNFKEAVFGVEKEIEIRRLESCGTCKGSGAKPGTKSSKCNTCGGQGRVVQSTRTPLGIFQQSMTCSSCNGAGEISTPCNTCSGEGRVRKTKRISIKVPAGVDSGSRLRVRNEGNAGRRGGPPGDLFVVLEVIPDPVLKRDDTNILYTCKISYIDAILGTTVKVPTVDGMVDLKIPAGTQPSSTLVMNKKGVPLLNKKNLRGDQLVRVQVEIPKKLSKDERKLVEELADLSKGKTAATSGRR* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00154 444 CDD DnaJ_zf 225 288 IPR001305 GO:0031072|GO:0051082
Lapu6g00154 444 SMART dnaj_3 83 140 IPR001623 -
Lapu6g00154 444 Gene3D - 195 330 - -
Lapu6g00154 444 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 47 438 - -
Lapu6g00154 444 CDD DnaJ 84 137 IPR001623 -
Lapu6g00154 444 Gene3D DnaJ domain 81 184 IPR036869 -
Lapu6g00154 444 FunFam Chaperone protein dnaJ 1, mitochondrial 335 442 - -
Lapu6g00154 444 NCBIfam molecular chaperone DnaJ 84 431 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lapu6g00154 444 Gene3D - 335 443 - -
Lapu6g00154 444 SUPERFAMILY HSP40/DnaJ peptide-binding domain 193 348 IPR008971 GO:0006457|GO:0051082
Lapu6g00154 444 Gene3D - 225 288 - -
Lapu6g00154 444 ProSiteProfiles Zinc finger CR-type profile. 212 293 IPR001305 GO:0031072|GO:0051082
Lapu6g00154 444 ProSitePatterns Nt-dnaJ domain signature. 125 144 IPR018253 -
Lapu6g00154 444 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 212 292 IPR036410 -
Lapu6g00154 444 Hamap Chaperone protein DnaJ [dnaJ]. 81 438 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lapu6g00154 444 ProSiteProfiles dnaJ domain profile. 84 148 IPR001623 -
Lapu6g00154 444 Pfam DnaJ domain 84 145 IPR001623 -
Lapu6g00154 444 SUPERFAMILY Chaperone J-domain 81 184 IPR036869 -
Lapu6g00154 444 PRINTS DnaJ domain signature 120 140 IPR001623 -
Lapu6g00154 444 PRINTS DnaJ domain signature 140 159 IPR001623 -
Lapu6g00154 444 PRINTS DnaJ domain signature 104 119 IPR001623 -
Lapu6g00154 444 PRINTS DnaJ domain signature 86 104 IPR001623 -
Lapu6g00154 444 Pfam DnaJ C terminal domain 200 415 IPR002939 -
Lapu6g00154 444 CDD DnaJ_C 196 418 - -
Lapu6g00154 444 SUPERFAMILY HSP40/DnaJ peptide-binding domain 340 426 IPR008971 GO:0006457|GO:0051082
Lapu6g00154 444 FunFam Putative Mitochondrial DnaJ chaperone 279 330 - -
Lapu6g00154 444 FunFam Chaperone protein dnaJ A6 chloroplastic 81 184 - -
Lapu6g00154 444 FunFam Molecular chaperone DnaJ 217 293 - -
Lapu6g00154 444 Pfam DnaJ central domain 225 288 IPR001305 GO:0031072|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00154 Lapu-Chr6 1229730 1234601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00154 85 147 C2H2 Transcription Factor Family AT1G74250 46.377 1.00e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00154 K03686 - gmx:100786143 794.267