Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00144 ATGAAGAGACTTAGCAGTTCCGATTCTTCTTCCACTCCCCTCATCACAATTTGTCCGTCCACAGAGGAACATAGTACGAGAAACTGCCAGCAGCACGCGTATGGTAGGGAGTTCCAATCGATGATGCTTGAGGGGCTTGACGAGGAAGGGTGTGTTGAAGAAATGGGGCATCAATCTGAGAAGAAACGTCGACTAAGTGTAGATCAAGTGAAGGCTTTGGAGAAGAACTTCGAGGTTGAAAACAAGCTTGAACCTGAGAGGAAGGTCAAACTTGCCCAAGAACTTGGGTTACAACCTAGACAAGTAGCTGTTTGGTTCCAAAACCGTCGAGCAAGGTGGAAAACCAAACAATTGGAGAGAGATTATGGTGTCCTCAAAGCCAATTTTGATGCTCTCAAGCTTAACTATGACACCCTCAATCAAGACAACGAAGCCTTGCGGAAGCAGATAAAGGAACTGAAATCGAGGCTAGAAGAAGAGAACACAGGAAGCGGGGTTTCCGTGAAGGAGGAGATAGTGATGCCAGACTCAGAAGACAAAACATCCATGGAACAAAGTAAGAGCGAGCCTAGTTCGGAATCCGAGGATCAGTTGAACTACGACTGTTTCAACAATAACGATTGTTTCGGAGGCGCTTCACTCTTCCCAGTGGACTTCAAAGACGGCTCTTCCGACAGCGATTCGAGTGCGATCTTGAACGAAGAGAACAACCGCAGCCCCATAACTGAACATCTCTTGCTGTCACCGCAGTCTTCTTCAATGAACTGTCTGCAGTTCCAGAAAGCGTATCAGGCGCAGTACGTGGTGAAGATGGAGGAGCACAATTTCTTCAGCGCCGACGAGGCCTGCAATTTCTTTTCGGATGAACAAGCTCCAACGTTGCAGTGGTGGAGCTGA 897 0.4771 MKRLSSSDSSSTPLITICPSTEEHSTRNCQQHAYGREFQSMMLEGLDEEGCVEEMGHQSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANFDALKLNYDTLNQDNEALRKQIKELKSRLEEENTGSGVSVKEEIVMPDSEDKTSMEQSKSEPSSESEDQLNYDCFNNNDCFGGASLFPVDFKDGSSDSDSSAILNEENNRSPITEHLLLSPQSSSMNCLQFQKAYQAQYVVKMEEHNFFSADEACNFFSDEQAPTLQWWS* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00144 298 PRINTS Lambda-repressor HTH signature 96 112 IPR000047 GO:0003677
Lapu6g00144 298 PRINTS Lambda-repressor HTH signature 87 96 IPR000047 GO:0003677
Lapu6g00144 298 Pfam Homeodomain 61 114 IPR001356 GO:0003677
Lapu6g00144 298 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 42 276 IPR045224 GO:0003700
Lapu6g00144 298 Gene3D - 55 123 - -
Lapu6g00144 298 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Lapu6g00144 298 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Lapu6g00144 298 SMART HOX_1 59 120 IPR001356 GO:0003677
Lapu6g00144 298 MobiDBLite consensus disorder prediction 1 26 - -
Lapu6g00144 298 MobiDBLite consensus disorder prediction 172 191 - -
Lapu6g00144 298 MobiDBLite consensus disorder prediction 156 197 - -
Lapu6g00144 298 FunFam Homeobox-leucine zipper protein HAT5 54 118 - -
Lapu6g00144 298 Pfam Homeobox associated leucine zipper 116 157 IPR003106 GO:0006355|GO:0043565
Lapu6g00144 298 Coils Coil 129 163 - -
Lapu6g00144 298 CDD homeodomain 61 117 IPR001356 GO:0003677
Lapu6g00144 298 SUPERFAMILY Homeodomain-like 46 118 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00144 Lapu-Chr6 1131668 1135057 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00144 1 298 Homeobox Transcription Factor Family AT4G40060 47.950 2.21e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu6g00144 Homeodomain 2.4e-16 CL0123