Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00142 ATGAAGAAAGCTCCTTACCCTAACCCCATCCCCTGTGCCGCCAATCGCCGCCATGAAATTCACCATCACCCACCACCACATGGCTGTTCCACTCCTCGTCCCATCTCCCGTCCCTTCCACCAATGGAGGCCTCGCATACATCCACATGTCGCCCGCCTCCACCGTCCTCCGGAGCCTTATTTCAAAGTGGAGCTCCGCCTCGGCCTTCGCCCTCCCAGCCGCGACGACGTCGAGGCCCTGATAGAGGAATGCGATCACAAGCCGGAGTCCTTCTCTTTCTACCCCGTCGACGACGTTGCCGCCTCGCTTAGTTACCGGAACTGGGAGCAGGCGTGCGACGCGGCCGCTTGGTTCTGGGAGTCGCTGCTGTTGGAGAAGCATGATTACACGCCGGCGCTGGACTCCAACGTTGCGGTGATGGACGATCTAGATGGTCGCCTTCGCGAGTTGTTCACGAGGCACGTTATGAAGGTGATGGAGGGGAAGGAGGTTAAGCGGTGGGTAGAGGAGAATGAACGGTTGTTAAAGGAGATTGCGAGGGTTTCAACTTTGCTGAGTAAGGCCACGCATATTAGCTTGACCAACCGCTATATTGAGAAGAAGGAAGGTCTCCTTGTTGAAAAAAACCAGGTTGAAAGGAGGTTGAAGGAGTTCGACTCTGCAATGGATTGTATACTGAAGTATCTGGTGGAGGGTGTTGACGTGGAGGGTGGTGGGAGTTTGAATGTGTTCAAGTTTGATGGATGTTATGATTGGAAGCGGATTCACTGTCTGATCAAAAGGGAGTGTCGGAGACTGGAGGATGGATTGCCCATTTATGCTTACCGGAGCGATATTCTTGGGAAAATAAATCATCAGCAGATAACGGTATTAATTGGAGAGACCGGTTCTGGGAAGAGTACACAGTTAGTTCAGTTCCTTGCTGATTCTGGCATTGGCGCTTCTGAATCCATCGTATGCACCCAACCTCGCAAGATTGCTGCCAAATCAGTGGCTCAAAGGGTCCAGGAGGAAAGCAGTGGATGTTATGAAGAGCAATCAATCAAATGTTCTATGTTTTCATCTTTGCATGAGTTAGATTCCAGGATAACATTCATGACAGATAACTGTTTATTGCAGCGCTACATGAGTGATTATAATTTGTCTGGGATCTCATGCATCATAATTGATGAGGCTCACGAGAGGAGCTTAAATACAGATTTACTGATGACTTTGTTGAAGAATTTACTTTATAGGAGGGATGAGATGCGGCTTATCATAATGTCTGCTACAGCTGATGCAAAACAGCTATCTGATTACTTTTATGGTTGTGGAATTTTTCGTGTGCATGGGAGAAGCTTTCCAGTGGATATCAAATATGTTCCTTCTGACTTTGCTGGGCATTCTGGTTCTGCTGTTGTTGCCTCATATGTTTCTGATGTTGTCAGAAAGGCAACTGAAGTTCATAAAACAGAGAAAGACGGAACTATTCTTGCTTTTTTGACCTCTCAGATAGAAGTAGAATATGCCTGTGAAAAGTTTCAAACTCCCTCTGCAGTTGCTCTGCCATTGCATGGAAAACTTTCATCTGAAGAGCAATTTCGTGTTTTTCAGAACTACCCTGGAAAGAGAAAAGTGATATTTTCAACAAATCTTGCAGAGACATCTCTCACAATTCCTGGTGTTACGTATGTGATTGATTCTGGTTTAGTTAAAGACTGCAGATTTGATCCTGGCAGTGGGATGAACGTACTTAAGGTTTGCTGGATTAGTCAGAGCTCTGCTGATCAACGGGCTGGTCGTGCTGGGAGGACTGAGCCTGGTGTGTGCTATAGACTGTACTCAGAAGCTGATTATCAATCTATGGACCTAAATCAAGAACCAGAGATTCGGAGAGTTCATCTTGGTGTAGCAGTTTTGAGGATCCTTGCTTTAGGAGTGAAGAATGTGCAGGATTTTGATTTTGTGGATGCTCCAAGTTCTAGCTCCATTGATATGGCAATCAGGAATCTAATTCAGTTACGAGCAATTGAGCTGAACAATGATGTTCATAATTTAACTCCTGAGGGTTGGTGCTTGTTAAAAATGGGAATTGAACCCAGGCTTGGTAAACTTATTCTTGGCTGTTTCAAACATGGTTTGGGTAGGGAAGGTATTGTTCTTGCTGCTGTGATGGCCAATGCTAGTAGCATCTTTTGCAGAGTTGGCAGTGAATTTGATAAACGAAGATCTGATTGTCTTAAAGTGCAATTTTGCCATTGTGATGGTGACCTCTTTACTCTTCTCTCTGTGTACAAGGAATGGGAAGCTCTGCCTCAGGAAAGGAAGAACAAATGGTGTTGGGAAAACAGCATCAATGCCAAATCCATGAGGAGATGCCAAGACACAATTTTGGAGTTAGAAAGTTGCCTTGAGCGTGAACATGATATTCTAACTCCGAGTAACTGGTGCTGGGACCCTTGTATACCCTCTTGCCATGATAAGAATTTGAAGAGGGTAATACTGTCCTCACTCGCAGAGAATGTAGCCATGTACTCTGGATGCAATCAACTCGGATATGAAGTGGCACAAACTGGGCAACACGTTCAACTACATCCATCTTGTTCATTACATGTATTTGCTCAGAAACCAAGTTGGGTTGTTTTTGGTGAGCTTCTTTCCGTCTCCAATCAGTATTTGGTCTGTGTGAGCGCATTTGACTTTCAATCATTATACAGCCTTTGTCCTGCTCCCTTGTTTGATATATCTAAACTGGAAGAGCGGAAGTTGCAAATGAAGACATTGTGTGGTCTTGGCTGTATTCTTCTTAAGAGGTTTTGTGGAAAATCCAACTGTAATTTGCTTGGGCTCCAATCACGCATAAGGAAAGTTTGTATGGACGAACGCATCTACATTGAAGTGAATGTTGACCAAAATGCAATCCACATATTTGCCACTTCAAATGACATGGATACAACCCTTGGGTTGGTTAATGGTGCTTTAGAATATGAGAAAAAGTGGCTACGGACTGAATGTATGGATAAGTGTTTGTATCATGGGTCTGGTCTGTGTCCACCTATAGCTTTGTTTGGGTCTGGTGCTGAGATAAAACATTTGGAACTTGAGAAACGTTCTTTGAGTATTGATGTCTGTCATGCAAACATAAATGCAATTGATGACAAGGAACTTTTGATGTTTTTAGAGAAGAATACCTCTGGTAGCATCTGTGCAGTGCACAAATTTGCAGGGAATATGAAGGATGAAGATAAGGAAAAGTGGGGCAGGATATTGTTTAGGTCCCCTGATTTTGTCAAAAGAGCTGCTGAACTAGATGGACAGGAGTTTTGTGGCTCCTCCTTGAGAATTTTCCCTTCGCAGTTGGGAGGGGATAAATCATTTCCGTTCCCTGCTGTTAAAGCAAAGATTTCTTGGCCTCGTAGGCTTAGCAGGGGATTTGCAATAGTTAAATGTGATATACAGGATGTCAATCATATGTTGAGAGATTTCTACAACCTTGCAATAGGGGGAAGGTATCTTCGATGTGAAGTTGGAAAAAAGAGTATGGACAGTGTTGTTATAAATGGGCTTGGCAAAGAGCTCTCGGAAGCTGAAATATTGGATGTGCTAAGAACTGCTACAAGTAGAAGGATTTTGGATTTTTTCTTGGTGAGAGGGGATGCTGTTGAAAATCCACCGTGCAGTGCTTTGGAAGAGGCACTCCTAAAAGAAATTTATCCCTCTTTGCCCAAAAGGAACCCTCACATTAGTTCTTGCCGAGTTCAGGTGTTTGTCCCTGAGGCTAAGGACGCCTTTATGAGAGCTTTAATCAGTTTTGATGGAAGATTGCATTTAGAGGCAGCGAAAGCTTTGGAGCAAATCGAAGGAAAGGTGTTACCTGGATGTCTATCATGGCAAAAGATAAAGTGCCAGCAGTTGTTTCATAGCTCCTTGATATTTCCTACACCAGTGTTCCGTGTGGTTAAGGAACAGCTGGATGGAGTACTACAAAGCTTCAGGAATTTGAAAGGCCTTGAATGGAACCTGGACAGGACAGTTAATGGTTCCCACCGAGTGAAGATAACTGCAAACGCTACCAGGACGGTGGCAGAAGTTAGAAGACCCCTAGAAGAACTGTTGAGAGGGAAAACCGTTGAGCATGACAACCTCACCCCTGCAGTTCTCCAGCTCCTGATGTCCAAGGATGGCTTTAATCTTAAAAGCTCATTGCAGCAAGAGACAGGAACTTACATTATTTTTGACAGGCACAACATGAATTTACGAGTGTTTGGTTCCCCAAACAAGGTTGCTTTGGCTCATGACAAGTTGATTCAATCCCTCCTTTCTCTCCATGAAGAAAAGCAGTTGGAAATCCATCTGAGAGGGAAGGATTTACCTCCTGATTTAATGAAGCAAATGATTAGGAATTTCGGGCCAGATTTGCATGGACTGAAAGAGAGGGTTCCGGGCGTTGATCTTACAATCAACACACGTCACCATGTAATCCGTCTTAATGGTAGGAAGGAGTTGAAACCCAGGGTAGAGGAAAAAATTTTTGAGATTGCTCGTTCAAGTCATCGTTTGGTTGGGACATTGGATGGTGGACCCAATTGCCCGATTTGCTTGTGCGAGATTGAGGATGCATACAGGCTTGAAGGCTGTGGTCATTTGTTCTGCCAGTTGTGTCTGGTGGAACAATGTGAATCTGCTATTAAAAACCAAGGCACCTTCCCAATATGTTGTACCCACGAGGACTGTGGAGATCACATCCTGCTTACAGATCTGAGGTCTCTCTTATTTGGTGCTAAGTTGGAGGATCTTTTCAGGGCTTCTTTGGGAGCTTTTGTGGCCAAGAGTGGGGGAACTTACAGGTTTTGCCCTTCTCCAGACTGCCCATCAATTTATCGAGTTGCAGTACCTGGAACTGCTGGTGAGCCATTTGTTTGTGGGGCTTGTTATTCAGAGACATGTACCAGTTGCCACTTAGAGTATCATCCTTACCTTTCATGCGAGAGATATAAAGAATTAAAGGAAGATCCGGATTCATCTCTGGTAGAGTGGCGAAGAGGGAAAGACGATGTTAAGAGTTGCTTTGCGTGTGGCTATGTCATTCAGAAGGTGGATGGGTGCAACCATGTTGAGTGCAAGTGTGGAAAACATGTGTGCTGGGTTTGCTTAGAGTTCTTCAGTGCTAGTGATGAATGTTATACCCATTTGAGAAATGTTCACTCGGCCATCATATAA 5199 0.4437 MKKAPYPNPIPCAANRRHEIHHHPPPHGCSTPRPISRPFHQWRPRIHPHVARLHRPPEPYFKVELRLGLRPPSRDDVEALIEECDHKPESFSFYPVDDVAASLSYRNWEQACDAAAWFWESLLLEKHDYTPALDSNVAVMDDLDGRLRELFTRHVMKVMEGKEVKRWVEENERLLKEIARVSTLLSKATHISLTNRYIEKKEGLLVEKNQVERRLKEFDSAMDCILKYLVEGVDVEGGGSLNVFKFDGCYDWKRIHCLIKRECRRLEDGLPIYAYRSDILGKINHQQITVLIGETGSGKSTQLVQFLADSGIGASESIVCTQPRKIAAKSVAQRVQEESSGCYEEQSIKCSMFSSLHELDSRITFMTDNCLLQRYMSDYNLSGISCIIIDEAHERSLNTDLLMTLLKNLLYRRDEMRLIIMSATADAKQLSDYFYGCGIFRVHGRSFPVDIKYVPSDFAGHSGSAVVASYVSDVVRKATEVHKTEKDGTILAFLTSQIEVEYACEKFQTPSAVALPLHGKLSSEEQFRVFQNYPGKRKVIFSTNLAETSLTIPGVTYVIDSGLVKDCRFDPGSGMNVLKVCWISQSSADQRAGRAGRTEPGVCYRLYSEADYQSMDLNQEPEIRRVHLGVAVLRILALGVKNVQDFDFVDAPSSSSIDMAIRNLIQLRAIELNNDVHNLTPEGWCLLKMGIEPRLGKLILGCFKHGLGREGIVLAAVMANASSIFCRVGSEFDKRRSDCLKVQFCHCDGDLFTLLSVYKEWEALPQERKNKWCWENSINAKSMRRCQDTILELESCLEREHDILTPSNWCWDPCIPSCHDKNLKRVILSSLAENVAMYSGCNQLGYEVAQTGQHVQLHPSCSLHVFAQKPSWVVFGELLSVSNQYLVCVSAFDFQSLYSLCPAPLFDISKLEERKLQMKTLCGLGCILLKRFCGKSNCNLLGLQSRIRKVCMDERIYIEVNVDQNAIHIFATSNDMDTTLGLVNGALEYEKKWLRTECMDKCLYHGSGLCPPIALFGSGAEIKHLELEKRSLSIDVCHANINAIDDKELLMFLEKNTSGSICAVHKFAGNMKDEDKEKWGRILFRSPDFVKRAAELDGQEFCGSSLRIFPSQLGGDKSFPFPAVKAKISWPRRLSRGFAIVKCDIQDVNHMLRDFYNLAIGGRYLRCEVGKKSMDSVVINGLGKELSEAEILDVLRTATSRRILDFFLVRGDAVENPPCSALEEALLKEIYPSLPKRNPHISSCRVQVFVPEAKDAFMRALISFDGRLHLEAAKALEQIEGKVLPGCLSWQKIKCQQLFHSSLIFPTPVFRVVKEQLDGVLQSFRNLKGLEWNLDRTVNGSHRVKITANATRTVAEVRRPLEELLRGKTVEHDNLTPAVLQLLMSKDGFNLKSSLQQETGTYIIFDRHNMNLRVFGSPNKVALAHDKLIQSLLSLHEEKQLEIHLRGKDLPPDLMKQMIRNFGPDLHGLKERVPGVDLTINTRHHVIRLNGRKELKPRVEEKIFEIARSSHRLVGTLDGGPNCPICLCEIEDAYRLEGCGHLFCQLCLVEQCESAIKNQGTFPICCTHEDCGDHILLTDLRSLLFGAKLEDLFRASLGAFVAKSGGTYRFCPSPDCPSIYRVAVPGTAGEPFVCGACYSETCTSCHLEYHPYLSCERYKELKEDPDSSLVEWRRGKDDVKSCFACGYVIQKVDGCNHVECKCGKHVCWVCLEFFSASDECYTHLRNVHSAII* 1733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00142 1732 CDD BRcat_RBR 1607 1658 - -
Lapu6g00142 1732 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 823 902 IPR011709 -
Lapu6g00142 1732 ProSiteProfiles TRIAD supradomain profile. 1519 1732 IPR044066 -
Lapu6g00142 1732 Pfam Helicase associated domain (HA2) 660 754 IPR007502 GO:0004386
Lapu6g00142 1732 CDD DEXHc_RHA-like 287 442 - -
Lapu6g00142 1732 ProSitePatterns Zinc finger C2H2 type domain signature. 1707 1728 IPR013087 -
Lapu6g00142 1732 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 385 394 IPR002464 -
Lapu6g00142 1732 Pfam IBR domain, a half RING-finger domain 1601 1655 IPR002867 GO:0008270
Lapu6g00142 1732 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 280 443 IPR014001 -
Lapu6g00142 1732 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 446 618 - -
Lapu6g00142 1732 SMART ha2_5 659 755 IPR007502 GO:0004386
Lapu6g00142 1732 Gene3D - 257 445 IPR027417 -
Lapu6g00142 1732 SUPERFAMILY RING/U-box 1676 1725 - -
Lapu6g00142 1732 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 621 664 - -
Lapu6g00142 1732 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 473 639 IPR001650 -
Lapu6g00142 1732 SMART helicmild6 501 599 IPR001650 -
Lapu6g00142 1732 CDD SF2_C_RHA 447 607 - -
Lapu6g00142 1732 SMART ultradead3 268 452 IPR014001 -
Lapu6g00142 1732 SUPERFAMILY RING/U-box 1522 1581 - -
Lapu6g00142 1732 Gene3D - 446 618 IPR027417 -
Lapu6g00142 1732 SMART ibrneu5 1587 1655 IPR002867 GO:0008270
Lapu6g00142 1732 SMART ibrneu5 1656 1720 IPR002867 GO:0008270
Lapu6g00142 1732 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1651 1729 - -
Lapu6g00142 1732 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 253 445 - -
Lapu6g00142 1732 Gene3D - 1651 1730 - -
Lapu6g00142 1732 Pfam Helicase conserved C-terminal domain 482 598 IPR001650 -
Lapu6g00142 1732 CDD Rcat_RBR_DEAH12-like 1678 1728 - -
Lapu6g00142 1732 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1521 1597 IPR013083 -
Lapu6g00142 1732 FunFam RBR-type E3 ubiquitin transferase 642 748 - -
Lapu6g00142 1732 ProSitePatterns Zinc finger RING-type signature. 1539 1548 IPR017907 -
Lapu6g00142 1732 Gene3D - 621 664 IPR042035 -
Lapu6g00142 1732 Pfam AAA domain 285 420 IPR003593 GO:0016887
Lapu6g00142 1732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 244 777 IPR027417 -
Lapu6g00142 1732 PANTHER ATP-DEPENDENT RNA HELICASE 257 905 - -
Lapu6g00142 1732 ProSiteProfiles Zinc finger RING-type profile. 1523 1565 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00142 Lapu-Chr6 1110436 1118877 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00142 1535 1724 ARIADNE family AT3G27710 31.606 2.41e-13 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00142 K12818 - gmx:100810008 2953.31