Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00141 ATGATGGTGTGTTTTTTCTCCTCTTGTTCGCATGTTGCTTCCATGGGGAGGAGAATCAGTAATAGTCCAATACCTTCTCCTCTGCCCTCACCAGCCTCACTTTTATTTCCTTGGTGTCCACCACCAGTCCTTGATGGAGATCACGACCACCTAAACCTTGCACCTATCATTATAATTGGCACAGGTAGCATATTTTGTGTAATCATGTTTCTCATCACCTTGTCCAGAATTCTAAAGTACTATTACTTCAATAGATACAACGTTAGCAGAAGAAACCCTCCAATATTATTTGACATTCGAGGAGATTATCCCTTTTCTGATGATGAGGAACAGGAACAAGTTATCAGGCAGCACTCCATATGGTTCAGCCCCACAGAGGGTCTCCAACAATCAACCATAGATTCCATCACAGTTTACAGATACAGACAAGATGAAGACTTGGTTAAAGAAACTGAGTGTCTTGTTTGCCTAGGTGAGTTTCAACAAGAAGAGAGTCTGAGACTATTGCCAAAGTGTAGCCATGCTTTCCACGTCCCTTGCATTGATACTTGGTTGTGGTCACATAAAACCTGTCCCTTGTGCCGCGCCCCTATTGTTCATGATGCTGCCAGTGTTGGTGGTGGAAGTGAGTCCGATTCAAGTGTTTCTGATATGATGATCACCGAGGACATGGAGGAATGTATTAGGGGTGAAGTGAGTGTTGGTGATGAGGATTCTAGTGAAGAGGAGAGAGGTGATGGAATTGAAGTTTTGACTGAATGTGGTGAGGCGAGTGGTCATTCTTCAATTCTAATTGCTTGTGCTTCTAATGTTGATACACAAGCACAAGAATTTGATGATGAAAATGAACCCAAAATGAAGAGGTCTTTCTCAGTGGATTCATCTTCTCCCTCATTCTTGATGGGACTTGTTTTCACCAAATGGGCATGTGCATTCTTACTCTGCTGCTGTCTCATCACTTCTGGGGTATATTCAGTGGAGGGGTTACATGGGGGTCCTAAAGTCAGAGGAGTGAACTTAGGAGGGTGGCTGGTCATTGAAGGTTGGATCAAGCCTTCACTGTTTGATGGCATTGCCAATGGAGACATGCTTGATGGGACAGAGGTGCAATTTAAGTCAGTGACGTCGCAGAGGTATGTTTCTGCTGAGAATGGGGGAGGAATGAATGTGACAGTTGACAGGGATGTCCCATCTTCATGGGAAACCTTCAGGTTATGGAGAGTATCTGAATCAGAATTTCAATTTCGTACCTCAGAGGGACAATTTCTTACGTGTGATGGTGGAGGCCACTCTGTCTCTGCAACAGTAAAATCTCCTTCAACATCTGAGACATATGAAATTGAGCGGAGTGGAAAAAATAGGATTCACCTCAAGATAAAGGGTGGGGCATATCTTCAGGCCACTACCGATGGCCAGCTTTCAGCGAACTACCCAGGTACACCAGGATGGGATGATAATGCTGCCACCTTTGAAATGACAATTGTGTCAAATAGCTTGCATGGAGATTACCAGCTAGCAAATGGATATGGGCATAATCGGGCAAAAGATGTTCTTCGGAGACATAGAAATAGCTTTATCACGATAGAGGATTTCAAATTTCTATATAAACATGGAATAAATACTGTGAGGATACCAGTTGGGTGGTGGATTGCTTTTGATCCTGATCCTCCGGGTCCATATATCGGAGGAAGTCTTGAAGCTCTAGATAATGCATTTTTTTGGGCACAAGAATATGATATAAAATGCATAATTGACCTTCATGCTGCTCCTGGTTCACAAAATGGAATGGAGCATAGTGCAAGCAGAGATGGATTTACGGGCTGGCCTACTTCTCCAGATTACATTTCTGAGTCATTGCATGTTATTGATTTTTTAGTTTCAAGATATGCAAAACATCCTGCCTTTCTGGGAATTGAGCTATTGAATGAACCATCTGCGGCCACAGTTTCATTAGATGTTTTGATTCCGTATTATAAGCAGGGCTACCAAATTGTTCGCAAATACTCATCATCTGCTTACGTGATAATCTGCCAGAGAATTGGCGTTGCAGATCCTTTGGAACTATATCAAGCCAACATAGGATCTCACAACATAGTTTTGGACTTGCATTTCTACAATCTCTTTGACCCATTCTTTGTTAATATGAGTGCTGTGGATAATGTTCAATACATATACAAAAGCCGGGAAGGTCAACTGCAGGCCTTAAACAATTCAAATGGCCCACTTGTTTTAGTTGGAGAGTGGGTGAATGAGTGGAATGTGACAAACGGATCCCAAAAAGATTATCAGGACTTTGGAAGGGCACAGTTAGACGTCTATAATGCAGCTTCCTTTGGATGGTGTTATTGGACACTGAAAAATGACAGACTGCACTGGGATTTTGAATGGAACATTAGGAACAGCTATCTTCAATTAGGTAACTCACCCAGCAAACGGAGCTTGAACATTCTAAAATTGTTAGGATTGGTATTCACCTGGTTTTTTCTACTTCAATTTTTATGA 2502 0.4217 MMVCFFSSCSHVASMGRRISNSPIPSPLPSPASLLFPWCPPPVLDGDHDHLNLAPIIIIGTGSIFCVIMFLITLSRILKYYYFNRYNVSRRNPPILFDIRGDYPFSDDEEQEQVIRQHSIWFSPTEGLQQSTIDSITVYRYRQDEDLVKETECLVCLGEFQQEESLRLLPKCSHAFHVPCIDTWLWSHKTCPLCRAPIVHDAASVGGGSESDSSVSDMMITEDMEECIRGEVSVGDEDSSEEERGDGIEVLTECGEASGHSSILIACASNVDTQAQEFDDENEPKMKRSFSVDSSSPSFLMGLVFTKWACAFLLCCCLITSGVYSVEGLHGGPKVRGVNLGGWLVIEGWIKPSLFDGIANGDMLDGTEVQFKSVTSQRYVSAENGGGMNVTVDRDVPSSWETFRLWRVSESEFQFRTSEGQFLTCDGGGHSVSATVKSPSTSETYEIERSGKNRIHLKIKGGAYLQATTDGQLSANYPGTPGWDDNAATFEMTIVSNSLHGDYQLANGYGHNRAKDVLRRHRNSFITIEDFKFLYKHGINTVRIPVGWWIAFDPDPPGPYIGGSLEALDNAFFWAQEYDIKCIIDLHAAPGSQNGMEHSASRDGFTGWPTSPDYISESLHVIDFLVSRYAKHPAFLGIELLNEPSAATVSLDVLIPYYKQGYQIVRKYSSSAYVIICQRIGVADPLELYQANIGSHNIVLDLHFYNLFDPFFVNMSAVDNVQYIYKSREGQLQALNNSNGPLVLVGEWVNEWNVTNGSQKDYQDFGRAQLDVYNAASFGWCYWTLKNDRLHWDFEWNIRNSYLQLGNSPSKRSLNILKLLGLVFTWFFLLQFL* 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00141 833 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Lapu6g00141 833 ProSitePatterns Glycosyl hydrolases family 5 signature. 636 645 IPR018087 GO:0004553|GO:0005975
Lapu6g00141 833 PANTHER FASCIN 334 805 IPR010431 GO:0007015|GO:0051015
Lapu6g00141 833 Pfam Cellulase (glycosyl hydrolase family 5) 526 788 IPR001547 GO:0004553|GO:0071704
Lapu6g00141 833 Gene3D - 347 485 - -
Lapu6g00141 833 SMART ring_2 153 194 IPR001841 -
Lapu6g00141 833 SUPERFAMILY Actin-crosslinking proteins 369 485 IPR008999 -
Lapu6g00141 833 Pfam Ring finger domain 152 195 IPR001841 -
Lapu6g00141 833 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 203 IPR013083 -
Lapu6g00141 833 SUPERFAMILY (Trans)glycosidases 333 804 IPR017853 -
Lapu6g00141 833 CDD RING-H2_EL5-like 152 195 - -
Lapu6g00141 833 Gene3D Glycosidases 486 813 - -
Lapu6g00141 833 SUPERFAMILY RING/U-box 140 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00141 Lapu-Chr6 1099478 1107911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00141 57 263 C3H Transcription Factor Family AT1G72220 34.016 3.69e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00141 - - gmx:100809472 1027.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00141 6 1099478 1107911 Lapu6g00141 6 1099478 1107911 ECH