Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00137 ATGGGTCTCTCAAATTTCCCAAGTGCATCTGAAGGTGTGCTTCCTGTGCTTGTGATAAACACGGTTCTCTCGGTGGCTGTGTTGAAGAACATGTTTAGATCCATGCTCCAAGTTGTTGGTGGCAATCCAAGTACAAGTTCCTCTGCAAACATAGAACAGGAGTCTCATGAAAGTTCACGAGAAAGGAGGGTGTCAATAACTCAGTACAAGGCATTGTCCAACGACATAGGAAGAAGAAGAAGTAGTGGCAGTGGATGGAAGGGTGAGGCCATGGTGGACTGCTGCGTTTGTTTGTGTCATTTTGAAGCCAATCAAGAGGTTAGCGAGTTGCCTTGCAAACATTACTTCCACAGAAGCTGCTTAGACAAATGGTTTGATAACAAACACACCACATGCCCCTTGTGTCGTTCCATGGACTAG 420 0.4571 MGLSNFPSASEGVLPVLVINTVLSVAVLKNMFRSMLQVVGGNPSTSSSANIEQESHESSRERRVSITQYKALSNDIGRRRSSGSGWKGEAMVDCCVCLCHFEANQEVSELPCKHYFHRSCLDKWFDNKHTTCPLCRSMD* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00137 139 SMART ring_2 94 135 IPR001841 -
Lapu6g00137 139 MobiDBLite consensus disorder prediction 41 62 - -
Lapu6g00137 139 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Lapu6g00137 139 SUPERFAMILY RING/U-box 70 137 - -
Lapu6g00137 139 Pfam Ring finger domain 93 136 IPR001841 -
Lapu6g00137 139 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 139 IPR013083 -
Lapu6g00137 139 PANTHER - 1 138 IPR044249 -
Lapu6g00137 139 SMART ringv_2 93 136 IPR011016 GO:0008270
Lapu6g00137 139 CDD RING-H2_PA-TM-RING 93 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00137 Lapu-Chr6 1064693 1065112 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00137 1 137 C3H Transcription Factor Family AT2G04240 33.121 5.74e-22 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00137 K16285 - gmx:100811790 201.445