Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00126 ATGGGAGAAACCGGAATCATTGTCCGGTTACAGGGAAGCTTAGACCCCAGAGCAGAAGAGTTCAGACCAACCATCACCAATCCCATTATTCAATGCCAATGGTACCCTGTTCCTCTTCCTCTCCCCCTACCATTACCTTTACCCTTCCCCCACCCTCTTCCTCCTCCTCCGCCTCCTCACCTCTCCACCTCCTCCACCCGCTCCCTCCTCCTCACCCCCCTCCCCTTCACCTCTGACTCCGCCCTCCGCGCTGAACTCCAGGCCTTCGGAGATGTTAGAGCCCTCCAAACTGAAGCCCTCCGCCATGGAATCCTCATCGTCCACTTCTACGACCTCCGCCATGCAGAGTCCGCCTTCGCTGCCATCCGTTCCATGCACCACCACTTCCCTCAATTCAACCCCGCCGCCCCCGGCCTTCTCTCTGCCCGCCCCATCTCCGCCCACTACGTCCTCCCCTCCTCCTCCTCCATCCCAGACGCCCACAACCAAGGTACCCTCGTCGTCTTCAACTTAGACCCTCACCTCTCCACCGACCACCTCCGTAGACTCTTTCACCCTTTTGGTCCCATAAAGGAATTGAGGGATACCCCATGGAAAAAGAACCAAAGATTCGTGGAATTTTTCGACACAAGAGACGCTGCCAAGGCCTTGAAACACATGAACGGCAAGCAAATTCACGGCAAACCCATCATCATTGAGTTCAGTAGACCCGGTGGTCACACTCGCAAGTTCTTCCACCACTCTCCTTCCTCTAAAACCATGCCTCTTGATTTCAATGCCCCACCACCCTTTCCTCCTTCCTCTCGTTTTGCTGCTCCTCGCATGCGTAGCTCTCAGCCTCAATTGTCTAACAATAAATCATTGAAAAGCCCCGAGAAGGGTGAAGAATCTGTGGAAGAGGCAATTGGGTCAATGAGTTTGACCGGGGAAGTTGGAAATGGGGTTGAAGAGCAGCAGCATTCACATGGTGGTGGCCCCCCAAGGAGGAATCTTAGCAGAAAGCAGAATTGCGAGACCACGCTAGTCGTAGCAGCCACAAAGCAACAACAACAACAACCACAGCAATTACCTAGAAGTAGGCACTGGAAGGGAAAGCAAGCAAAGAAACACGAAGCTCGCTTTCTAATCAAAGAGGATGCCATTGTCGAGTCTGGTCCCAAAGATACTCGAACTACTGTCATGATCAAAAACATTCCCAACAAGTACAGTCAGAAGTTGCTATTGAACATGCTGGATAATCACTGCATACACTGCAACGAGCAGATTGCAGACGGCGATGAGCAGCCTCTATCCTCCTACGACTTCGTGTACCTCCCCATTGATTTCAACAACAAGTGCAACGTGGGATATGGGTTCGTGAACATGACATCCCCGGAGGCAACACTCAGGCTCTACAAGGCCTTCCACCTTCAACATTGGGAGGTTTTTAATTCAAGAAAAATCTGTGAAGTCACCTATGCAAGAGTTCAGGGTTTGGAGGCATTAAAGGAGCACTTTAAGAACTCAAAGTTCCCATGCGAGATGGAGCATTACCTGCCAGTGGTGTTTTCACCACCTCGAGATGGGAGGGAACTGACTGAGCCACTTCCATTAGTGGGGAACAGCAACACCAACAAGCAGCATCAACCACCCGTTTCAATTCCAAACTGCCATGATAATGGCAGTGATGACGTGGCAAGCAGCAAAAGCGGCGGCGTAGGTGGTGATGTTGATGATGACACGAATGCAGAAGTGGGTGGTGGAGGAGGTCTAGGAAATTCTGAAGGGTAG 1770 0.5169 MGETGIIVRLQGSLDPRAEEFRPTITNPIIQCQWYPVPLPLPLPLPLPFPHPLPPPPPPHLSTSSTRSLLLTPLPFTSDSALRAELQAFGDVRALQTEALRHGILIVHFYDLRHAESAFAAIRSMHHHFPQFNPAAPGLLSARPISAHYVLPSSSSIPDAHNQGTLVVFNLDPHLSTDHLRRLFHPFGPIKELRDTPWKKNQRFVEFFDTRDAAKALKHMNGKQIHGKPIIIEFSRPGGHTRKFFHHSPSSKTMPLDFNAPPPFPPSSRFAAPRMRSSQPQLSNNKSLKSPEKGEESVEEAIGSMSLTGEVGNGVEEQQHSHGGGPPRRNLSRKQNCETTLVVAATKQQQQQPQQLPRSRHWKGKQAKKHEARFLIKEDAIVESGPKDTRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIADGDEQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMEHYLPVVFSPPRDGRELTEPLPLVGNSNTNKQHQPPVSIPNCHDNGSDDVASSKSGGVGGDVDDDTNAEVGGGGGLGNSEG* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00126 589 MobiDBLite consensus disorder prediction 345 365 - -
Lapu6g00126 589 FunFam Terminal EAR1-like 1 338 496 - -
Lapu6g00126 589 SMART rrm1_1 165 233 IPR000504 GO:0003723
Lapu6g00126 589 MobiDBLite consensus disorder prediction 530 560 - -
Lapu6g00126 589 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 230 IPR000504 GO:0003723
Lapu6g00126 589 Gene3D - 158 244 IPR012677 -
Lapu6g00126 589 MobiDBLite consensus disorder prediction 272 288 - -
Lapu6g00126 589 MobiDBLite consensus disorder prediction 345 359 - -
Lapu6g00126 589 SUPERFAMILY RNA-binding domain, RBD 165 469 IPR035979 GO:0003676
Lapu6g00126 589 CDD RRM3_EAR1_like 390 491 IPR034458 -
Lapu6g00126 589 MobiDBLite consensus disorder prediction 241 300 - -
Lapu6g00126 589 MobiDBLite consensus disorder prediction 517 589 - -
Lapu6g00126 589 PANTHER RNA RECOGNITION MOTIF-CONTAINING 386 520 - -
Lapu6g00126 589 FunFam Protein MEI2-like 1 163 255 - -
Lapu6g00126 589 MobiDBLite consensus disorder prediction 314 333 - -
Lapu6g00126 589 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 237 IPR000504 GO:0003723
Lapu6g00126 589 Gene3D - 332 496 IPR012677 -
Lapu6g00126 589 Pfam RNA recognition motif 2 390 500 IPR007201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00126 Lapu-Chr6 972409 975040 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00126 166 236 Eukaryotic Initiation Factors Gene Family AT2G23350 37.333 2.15e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00126 - - var:108327668 964.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00126 6 972409 975040 Lapu6g00126 6 972409 975040 ECH