Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00121 ATGGAAATTCCAATTCCACAGTCACTTATGTTACTCTTTCTACTGCTTGTACCTTCCTGCATTTGTTCTTCACCACTTCAAGATCCCGAACTAGTGGTCGAAGATGTACAAAAGAGCATTAATGCCTCAAGGAGGAACTTAGCATTTCTCTCTTGTGGGACAGGGAACCCCATTGATGATTGTTGGAGGTGTGATGCCAATTGGGAGAAGAATAGAAAGAATTTAGCAAAGTGTTCCATTGGGTTTGGTAAGAATGCAATTGGAGGGAGGGATGGTAAAATATATGTGGTGACTGACCCTGGTGATCACCCTGTGAATCCCAAACCAGGAACACTTAGATATGGTGTGATCCAAGAGGAACCATTGTGGATCATTTTCAAGCGTGATATGGTGATCAAGTTGAAGCAAGAGCTTATGATGAACTCTTTCAAGACAATTGATGGTAGAGGGGCAAGTGTGCACATTGCTGGTGGCCCTTGCATTACTATACAGTATGTGACCAACATTATCATTCATGGGATTAACATCCATGACTGCAAACAAGGAGGGAATGCCTATGTGAGAGACTCCCCTACACACTATGGGTGGAGGACTCTCTCAGATGGTGATGGCATCTCTATCTTTGGTGGGAGTCATGTTTGGGTGGATCACTGCTCTCTCTCCAATTGCCGTGATGGACTAATTGATGCCATCCACGGATCCACTGCCATTACCTTATCCAACAATTACATGACCCACCATAACAAGGTCATGCTTTTGGGCCACAGTGATACTTTCACTAGAGACAAGAACATGCAAGTCACCATTGCCTTTAACCATTTTGGAGAAGGGCTAGTACAGAGAATGCCAAGATGTAGGTATGGGTACTTCCATGTGGTGAACAATGATTACACCCAATGGAAAATGTATGCCATAGGAGGTAGTGCTGCCCCAACCATCAATAGCCAAGGGAATAGATTCTTTGCTCCCAATGACCATACCTTCAAAGAGGTGACAAAGAGGGAGAATACAGCACAGAGCAAATGGAAGAATTGGAATTGGAGGTCAACGGGAGATTTGATGTTAAATGGTGCCTTTTTCACTGCATCAGGAGCAGGTACATCTTCAAGCTATGCAAGAGCATCTAGTTTGGCAGCAAAACCATCTTCACTTGTCAGTTCTATAACAGCATCAGCTGGATCACTTAGATGCAGAAAGGGTTCACGCTGCTGA 1212 0.4406 MEIPIPQSLMLLFLLLVPSCICSSPLQDPELVVEDVQKSINASRRNLAFLSCGTGNPIDDCWRCDANWEKNRKNLAKCSIGFGKNAIGGRDGKIYVVTDPGDHPVNPKPGTLRYGVIQEEPLWIIFKRDMVIKLKQELMMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNAYVRDSPTHYGWRTLSDGDGISIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITLSNNYMTHHNKVMLLGHSDTFTRDKNMQVTIAFNHFGEGLVQRMPRCRYGYFHVVNNDYTQWKMYAIGGSAAPTINSQGNRFFAPNDHTFKEVTKRENTAQSKWKNWNWRSTGDLMLNGAFFTASGAGTSSSYARASSLAAKPSSLVSSITASAGSLRCRKGSRC* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00121 403 PANTHER PECTATE LYASE 18-RELATED 28 401 IPR045032 GO:0030570
Lapu6g00121 403 SUPERFAMILY Pectin lyase-like 40 397 IPR011050 -
Lapu6g00121 403 Pfam Pectate lyase 135 320 IPR002022 -
Lapu6g00121 403 SMART amb_all 129 326 IPR002022 -
Lapu6g00121 403 Gene3D - 55 396 IPR012334 -
Lapu6g00121 403 FunFam Pectate lyase 55 396 - -
Lapu6g00121 403 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Lapu6g00121 403 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
Lapu6g00121 403 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Lapu6g00121 403 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Lapu6g00121 403 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Lapu6g00121 403 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Lapu6g00121 403 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Lapu6g00121 403 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00121 Lapu-Chr6 933668 942753 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00121 10 403 Polysaccharide Lyase AT5G63180 76.750 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00121 K01728 - gmx:100782388 761.911