Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00110 ATGGATAATGGGTGTTTCTCTTCTCCTCGACGTGATTTCCCTGCTGGTCTGAGAGTTCTCGTTGTGGATGATGATCCTACGTGGCTCAAGATCCTTGAGAAGATGCTCAAGAAGTGCAATTATGAAGTGACTACATGTTGTTTAGCACGGCATGCTCTAAACTTGCTTCGTGAAAGGAAGGATGGATATGATATAGTGATCAGCGATGTAAATATGCCCGACATGGATGGTTTTAAACTTCTTGAGCATGTTGGGCTTGAGATGGATCTTCCTGTGATTATGATGTCTGTGGATGGGGAAACAAGCAGGGTCATGAAAGGTGTTCAACATGGAGCATGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAGCTGCGAAATATATGGCAGCATGTCTTTAGAAAAAGGATACACGAGGCAAAAGAATTTGAAAGCTTTGAGAGTTTTGAGAGCATTCATTTAATGAAAAATGGATCAGAGCTATCAGACGAGGGGAACTTGTTTGCTGTAGAAGATGTTACCTCAACAAAGAAAAGAAAAGATGCAGATAACAAACACGATGACAAAGAATGTATGGATCCATCATCTACAAAGAAAGCTAGAGTAGTCTGGTCTGTAGATCTTCATCAGAAGTTCGTTAAAGCTGTGAATCAGATTGGATTTGATAAAGTTGGACCCAAGAAAATACTAGATCTGATGAACGTTCCATGGCTGACTAGAGAGAATGTTGCTAGCCACTTGCAGAAATATCGGCTTTATTTGAGTAGGATTCAGAAAGAAAACGATCGCAGATCTTCCTCGAGTGGAATGAAGCATTCAGATTTTCATTCAAAAGACCTGGGAAGTTTGGGTTTTCAAAACCCAGTAAACAAGCAACAAAATGATGTTTCAAATGACAGCTACAATTATTCGGATGGATCATTACAGCTTCCGAACGTGGAAACTGAAAGTCATGAAGGCGATAAGGGAACTGTTTCGCAGTTCACCATAGCAAAAAAAGGAAGGGCTTTGACTGGTAACATCGCCGACTCAAATATGAGAGAGAGTTTAAGGGTTGGCCTTAATCAACCTTTTGACCCTCTGGACTCAGAAGGAAATCATGCAGTGTTTGATTGCTCCATGCCAACACAGTACTCTTGGACTGAAGTTCCACACATGCAACTCAAAGAGGAACACAAGGCACTTGTTCGTTTAGAAGATAGCTTCAAGCAGATGCCTTTACATGGTAAGCAGCATCACATCCAAGTTGATCAATCACAATCAGTTGCTTCAATTAGTTCAGCTCCCTCTATAACGGAGGAAGAGGTTGCTGCTTGTATAGAAGCAAAACCTTTGTTTTCAGAATACAAGAATGATCATGTCAGTTCTGTGAATTCAATAGGGAATGCAGTTGACACCTTTCCAATTCAGCCAGGAAGTCTTGTTATGAATGCTCAATCTTTAGAACCCATTTCAACTACAAATTCAGGATTGAAAGCACAGGGATATAATAATCTCAGTTGCATTTCCGATCTGGAAATATACCAAAGAAACCTTCTTTTGGGAGGGGAGGCAGCTTCTGCATCTTTGGATGAGGACTTGCATTTCCATTGGCTACAAGGTGAATGCTATAATATGAACTTTGGTCTGCAGAATATAGGAATGTCAGAATATTGTGATCCAGGACTTATAGCAGAAGCTCCAATTCACTTATACGATTCAGCCGATTACTCAGTTATAGATCAAGTACAGGATGAAAATTCGGAGCCGCGCGCATCGATCACGGGATCTAACTTTTAA 1779 0.4064 MDNGCFSSPRRDFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAKEFESFESFESIHLMKNGSELSDEGNLFAVEDVTSTKKRKDADNKHDDKECMDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRIQKENDRRSSSSGMKHSDFHSKDLGSLGFQNPVNKQQNDVSNDSYNYSDGSLQLPNVETESHEGDKGTVSQFTIAKKGRALTGNIADSNMRESLRVGLNQPFDPLDSEGNHAVFDCSMPTQYSWTEVPHMQLKEEHKALVRLEDSFKQMPLHGKQHHIQVDQSQSVASISSAPSITEEEVAACIEAKPLFSEYKNDHVSSVNSIGNAVDTFPIQPGSLVMNAQSLEPISTTNSGLKAQGYNNLSCISDLEIYQRNLLLGGEAASASLDEDLHFHWLQGECYNMNFGLQNIGMSEYCDPGLIAEAPIHLYDSADYSVIDQVQDENSEPRASITGSNF* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00110 592 SUPERFAMILY CheY-like 16 144 IPR011006 -
Lapu6g00110 592 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 301 IPR045279 GO:0009736
Lapu6g00110 592 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Lapu6g00110 592 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Lapu6g00110 592 CDD REC_typeB_ARR-like 19 133 - -
Lapu6g00110 592 Gene3D - 17 186 - -
Lapu6g00110 592 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Lapu6g00110 592 Gene3D - 195 258 - -
Lapu6g00110 592 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Lapu6g00110 592 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Lapu6g00110 592 SMART REC_2 17 129 IPR001789 GO:0000160
Lapu6g00110 592 MobiDBLite consensus disorder prediction 261 278 - -
Lapu6g00110 592 FunFam Two-component response regulator 17 173 - -
Lapu6g00110 592 FunFam Two-component response regulator 195 258 - -
Lapu6g00110 592 MobiDBLite consensus disorder prediction 175 194 - -
Lapu6g00110 592 MobiDBLite consensus disorder prediction 283 314 - -
Lapu6g00110 592 MobiDBLite consensus disorder prediction 261 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00110 Lapu-Chr6 847861 853233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00110 13 285 Response Regulator Gene Family AT2G25180 52.632 9.38e-82 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lapu6g00110 Response_reg 1.6e-24 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00110 6 847861 853233 Lapu6g00110 6 847861 853233 ECH