Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00105 ATGTATTTGTCGGAGAAGCCGCGTCCAATCGACTTCTACAAGGAGGAAGGGGCGCGCGACATGATGATCGAGGTCGTCTCCAACGGCGACCTTCCGCCGCCGCCGCCGCACCATCCGCCGCCGATGATCCTCGGCGAGAGCAGCGGAGAAGACCCCGAGGTGGAGATCAAGGCCCCCAAGAAACGGGCGGAGACGTGGGTGCAGGACGAGACGCGCTCGCTCATTGGCCTCCGCCGCGAGATGGACGCGCTCTTCAATACCTCCAAGTCCAACAAGCACCTCTGGGAGCAGATATCTGCCAAGATGAGGGAGAAGGGTTTCGATCGCTCTCCCACTATGTGCACCGATAAGTGGCGCAACCTCCTAAAGGAGTTTAAGAAGGCCAAGCACCAGGACCGTGGAGGGAGTGGCTCCGCCAAGATGTCATATTACAAGGAGATTGATGAGATCCTCAGAGAGAGGAGTAAGAATGTGCAGTACAAGAGCCCCACTCCTCCGCCCAAGGTTGATTCCTTCATGCAGTTTGCCGATAAAGGTATTGATGATACTAGCATCTCTTTTGGACCTGTAGAAGCTACTGGAAGACCAACGCTAAATCTTGAGAGAAGTTTGGATCATGATGGACATCCTCTTGCCATTACCACAGCTGATGCTGTTGCAGCTAGTGGAGTCCCTCCTTGGAATTGGAGAGAGACTTCTGGAAATGGTGGAGAAAGTCAGTCATGTTGTGGAAGGGTTATATCAGTTAAATGGGGTGATTATACAAGACGAATAGGTATTGATGGCACTCCAGAAGCCATCAAAGAGGCAATCAGGGCTGCTTTTAGGTTGAGAACTAAACGCACATTTTGGTTGGAGGATGAAGACCAGATTATACGAAGTATTGACCGTGAAATGCCTATAGGAAGTTACACTCTTCACCTTGATGAAGGAATGGCCATTAAGTTATGTCTCTATGATGAGTCCGAGCATCTTCCTGTGCATACTGAAGATAAGGTATTTTACACTGAAAGTGATTACCGTGATTTTCTGACCCGCCGGGGTTGGTTATGTCTAAGAGAATTTGACGGATATAGAAATATTGACAACTTGGATGATCTTCGACCTGGTGCCATCTATCGTGGTATGAGTTGA 1134 0.4974 MYLSEKPRPIDFYKEEGARDMMIEVVSNGDLPPPPPHHPPPMILGESSGEDPEVEIKAPKKRAETWVQDETRSLIGLRREMDALFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGGSGSAKMSYYKEIDEILRERSKNVQYKSPTPPPKVDSFMQFADKGIDDTSISFGPVEATGRPTLNLERSLDHDGHPLAITTADAVAASGVPPWNWRETSGNGGESQSCCGRVISVKWGDYTRRIGIDGTPEAIKEAIRAAFRLRTKRTFWLEDEDQIIRSIDREMPIGSYTLHLDEGMAIKLCLYDESEHLPVHTEDKVFYTESDYRDFLTRRGWLCLREFDGYRNIDNLDDLRPGAIYRGMS* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00105 377 SMART sant 62 124 IPR001005 -
Lapu6g00105 377 Gene3D - 66 128 - -
Lapu6g00105 377 MobiDBLite consensus disorder prediction 26 53 - -
Lapu6g00105 377 CDD GT1 64 129 - -
Lapu6g00105 377 ProSiteProfiles Myb-like domain profile. 58 122 IPR001005 -
Lapu6g00105 377 PANTHER FI21293P1 46 351 - -
Lapu6g00105 377 FunFam trihelix transcription factor GT-1 66 128 - -
Lapu6g00105 377 Pfam Myb/SANT-like DNA-binding domain 65 150 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00105 Lapu-Chr6 794642 799604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00105 20 376 Trihelix Transcription Factor Family AT3G25990 69.945 0.0 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lapu6g00105 Myb_DNA-bind_4 1.9e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00105 - - ccaj:109807736 746.117