Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00089 ATGGATATTGCCGAGGTTGAAGAAAATCTTTTTGCAGCAAGCGATGCCAAGTTACATGGAGAAATGTGCAAGTGTCTTTCTGCCATATACTGCAAGATATTGTTATTATTTCCTTCTTTAGAAGCAGCTAGGCCTAGGAGCAAATCTGGAATTCAGGCATTGTGCTCATTGCATGTAGCCTTAGAAAAGGCGAAGAATGTTCTTCGACACTGCTCAGAGTCTAGTAAACTCTACTTGGCCATAACTGCGGATTCTGTTCTTCTAAAATTTGAAAAGGCTAAATGTGCTCTTGAGGATAGTCTTAAACGGGTGGAAGATATTGTTCCCCAATCTATTGGTTGTCAGATTGGTGAAATTGTCAATGAACTTGCAAGTACGGCATTTGCACTTGACCCCTCAGAGAAGCAAGTTGGGGATGATTTAATTGCATTGCTTCAAAAGGGAAGAAAACTTAATGACTCTAATGACAGTAATGAACTTGAATGTTTTCATCTAGCTGCTACTACTATTGGAATCACTTCTTCAAGGGCAGCTCTTACAGAAAGAAGATCTCTAAAAAAACTCATAGAAAGAGCTCGGGCTGAGGATGACAAGCGGAAAGAATCAATTATTGCTTACCTTTTATACCTTATGAGGAAATATTCCAAATTATTTAGAAGTGAGTTCTCTGATGATAATGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTGTTCAGAGATCTCTTGAGGATGGCATTACTGGTGGTCATTGTCATGTCTTTGACAGACAGCTTTCAAAACTTAGTTCCTTTAACTTTAAGCCAAATAATAGGGAATCAGGGCAGATGCTCGTTTTCCCTGAAGAGTTACGATGCCCAATATCTCTGCAACTTATGAGTGATCCTGTTATAATTGCTTCTGGCCAAACATATGAAAGGGTTTGTATAGAGAAATGGTTCAGAGATGGGCACAAGACCTGCCCAAAGACTCAACAGAAACTCTCACATCTTTCCTTGACTCCAAATTACTGTGTTAAGGGTCTTGTGACTAGTTGGTGTGAACAGAATGGAGTTCCTATTCCCGAAGGCCCTCCTGAATCTCTCGATTTTAACTACTGGAGATTGGCATTATCAGACTCTGAATCCACAAATTCGAGATCTGAAAACAGTGTTGGCTCTTGCAAGTTGAAGGGTGTTAAAGTTGTTCCTGTAGAAGAGAGTGGTATCTCAGAGCAAATGGGGGGAAATGCAGCTGAAGATTTTTCTGCACTAGAGGAAGATAAGGAACGGTATCTTTCTTTTCTTAAAGTCTTGTCAGAAGGGAACAATTGGAAGAGGAAGTGCAAAGTTGTTGGACAATTGAGGCTGTTGCTGAGGGATGATGAGGAAGCCAGGATTTATATGGGGGCTAATGGATTTGTTGATGCACTTATGCAGTTTCTGCAATCAGCTGTGCGTGAAGGGAATGTGATGGCTCTTGAAAATGGAGCTATGGCTCTGTTCAACCTGGCTGTGAATAACAACAGAAATAAGGAAATTATGATATCAGCAGGAATCTTGTCGCTTTTGGAGGAAATGATTTCAAAAACCAGTTCCTATGGTTGTGTAGCCGCCCTGTATCTGAATCTTTCTTGCCTTGAAGAAGCCAAAGACGTGATTGGCACGAGTCAGGCTGTCCAGTTCCTTATCCAGATTCTTCACGCCAAGACAGAAGTGCAGTGCAAGATAGATTCCCTCCATGCACTCTATAACCTTTCCACATCGTCCCCTAACATTCCTCATCTCCTTTCATCTGGCATCATTGATGGCCTACAATCCCTTCTTGTAGGCCAGGGTGATTGCACTTTGACAGAAAAATGCATAGCTGTTTTGATGAACTTGGCTGTTTCTACAGCAGGAAGAGAGCAAATGATATTGACTCCCGCACTCATAAGTGCCTTGGCTTCCACGCTGGATACCGGTGAGCTCATGGAGCAGGAGCAAGCTGCCTCTTGTCTCCTAATTTTGTGTAATAGGAGTGAGGAATGTTGTGAGATGGTCTTGCAAGAAGGGGTTATCCCTGCATTGGTGTCATTAACGGTGAATGGAACCTCGAGAGGAAGGGAAAAGGCTCAGAAACTCTTGATGGTCTTCCGAGAGCAGCGACAACGGGACCATTCACCTGTTAAGACAAATCAACGTGAACCTGAAAATAGTGATTTGTCTATGCCTCCTCCTGAAACGAAACCGTTATGTAAATCAATATCCAGAAGAAAGGCGGTAGGGAAAGCTTTTAGCTTTCTCTGGAAAAGCAAGAGCTATTCTGTTTATCAGTGTTAA 2298 0.4217 MDIAEVEENLFAASDAKLHGEMCKCLSAIYCKILLLFPSLEAARPRSKSGIQALCSLHVALEKAKNVLRHCSESSKLYLAITADSVLLKFEKAKCALEDSLKRVEDIVPQSIGCQIGEIVNELASTAFALDPSEKQVGDDLIALLQKGRKLNDSNDSNELECFHLAATTIGITSSRAALTERRSLKKLIERARAEDDKRKESIIAYLLYLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQRSLEDGITGGHCHVFDRQLSKLSSFNFKPNNRESGQMLVFPEELRCPISLQLMSDPVIIASGQTYERVCIEKWFRDGHKTCPKTQQKLSHLSLTPNYCVKGLVTSWCEQNGVPIPEGPPESLDFNYWRLALSDSESTNSRSENSVGSCKLKGVKVVPVEESGISEQMGGNAAEDFSALEEDKERYLSFLKVLSEGNNWKRKCKVVGQLRLLLRDDEEARIYMGANGFVDALMQFLQSAVREGNVMALENGAMALFNLAVNNNRNKEIMISAGILSLLEEMISKTSSYGCVAALYLNLSCLEEAKDVIGTSQAVQFLIQILHAKTEVQCKIDSLHALYNLSTSSPNIPHLLSSGIIDGLQSLLVGQGDCTLTEKCIAVLMNLAVSTAGREQMILTPALISALASTLDTGELMEQEQAASCLLILCNRSEECCEMVLQEGVIPALVSLTVNGTSRGREKAQKLLMVFREQRQRDHSPVKTNQREPENSDLSMPPPETKPLCKSISRRKAVGKAFSFLWKSKSYSVYQC* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00089 765 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Lapu6g00089 765 CDD RING-Ubox_PUB 280 332 IPR045210 -
Lapu6g00089 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Lapu6g00089 765 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Lapu6g00089 765 Coils Coil 175 195 - -
Lapu6g00089 765 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Lapu6g00089 765 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Lapu6g00089 765 PANTHER U BOX DOMAIN-CONTAINING 21 705 - -
Lapu6g00089 765 SUPERFAMILY RING/U-box 271 354 - -
Lapu6g00089 765 SMART arm_5 454 498 IPR000225 GO:0005515
Lapu6g00089 765 SMART arm_5 500 538 IPR000225 GO:0005515
Lapu6g00089 765 SMART arm_5 581 622 IPR000225 GO:0005515
Lapu6g00089 765 SMART arm_5 539 580 IPR000225 GO:0005515
Lapu6g00089 765 SMART arm_5 624 664 IPR000225 GO:0005515
Lapu6g00089 765 Gene3D - 406 710 IPR011989 -
Lapu6g00089 765 MobiDBLite consensus disorder prediction 708 737 - -
Lapu6g00089 765 SUPERFAMILY ARM repeat 427 706 IPR016024 -
Lapu6g00089 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 352 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00089 Lapu-Chr6 683174 688572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00089 1 765 U-box Gene Family AT1G27910 65.390 0.0 996
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00089 - - gmx:100804344 1335.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00089 6 683174 688572 Lapu6g00089 6 683174 688572 ECH
Lapu6g00089 6 683174 688572 Lapu3g02587 3 48208661 48213854 PCT