Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00082 ATGGTGAAGTATTCCAGAGAACCCGACAATCCCACCAAGTCCTGCAAGGCAAGAGGCGCCGACCTCAGAGTGCATTTCAAGAACACTAGGGAAACTGCCTTTGCCATCAGGAAGTTGCCCTTGGTTAAAGCTAAAAGATACTTGGAGGATGTGTTGGCGCACAAACAAGCCATCCCTTTCCGCCGTTTCTGCCGAGGTGTTGGGAGGACTGCTCAGGCCAAGAACAGACACTCTAATGGACAAGGACGCTGGCCCGTCAAATCAGCTAAATTCATCCTGGATCTGCTGAAGAATGCTGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTAGATGCTCTTTACATTTCTCATATCCAGGTTAATCAAGCACAGAAGCAAAGACGCCGAACCTACCGAGCCCACGGAAGAATTAACCCTTACATGTCTTCTCCCTGCCATATTGAGCTGATATTATCTGAGAAGGAAGAGCCTGTGAAGAAAGAGCCCGAGACCCAATTGGCAACTAGCAAGAAGAAGGGTGCTCTTCGAAGTGGTGCTTCATCTTAA 546 0.4817 MVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKKKGALRSGASS* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00082 181 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Lapu6g00082 181 NCBIfam 50S ribosomal protein L22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Lapu6g00082 181 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Lapu6g00082 181 PANTHER 60S RIBOSOMAL PROTEIN L17 1 173 IPR005721 GO:0003735|GO:0006412|GO:0015934
Lapu6g00082 181 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Lapu6g00082 181 MobiDBLite consensus disorder prediction 154 181 - -
Lapu6g00082 181 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Lapu6g00082 181 Gene3D Ribosomal protein L22/L17 1 180 IPR036394 GO:0003735|GO:0005840|GO:0006412
Lapu6g00082 181 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Lapu6g00082 181 FunFam 60S ribosomal protein L17 1 175 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00082 1 174 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 91.379 6.18e-120 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00082 K02880 - gmx:100305777 350.517