Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00080 ATGGTTACTATGGCGGAGGAAGAAGAGAACGGAGTGTCGATTCAACTCGAATTCCCGAAGGGTCGGGTGAAGAAGATTATGACGCTGGACAAGGACGTGAAGAGAGTGAGTTCAGAAGCGTTGTTCCTGGTGTCGCGCTCCACGGAGTTATTCCTCCAATTTCTGGCTGAAAAATCTGCGAACGTTGCGATTGAGAAGAAACGGAAGACCGTGAATCTGGAACACATGAGAGTTGCCGTTAAGAGGCACCAGCCAACCAGGGATTTTCTCCTCGACGAACTTCCGCCTCCGTCTCAGCCCGCCAAGCCCGATAAGCTCACTCAGCCCGTGGTTCGGCCCAAACCCGATGCCCCTCCGCCTGGTACTCGCCGCATCGACCAATTTTTCCGAAAGCCAGAGCCTCAAAACCTGGCCCAAGTTCAATCGCCTGAAAATCCAGCCCAAGCCCAATCGCCTGAAGTTGCTGCCCAAGCTCAATCGCCTGAAGTTCCTGCTCAAGCTCAATCGCCTGAAATCCCTGCTCAAGCTCAATCGCCTGAAATTCCTGTTCAAGCTCAATCGCCAGTACCCGTTAAAAGAGCTCTAGAGGGCTTCTTTACCGTAAAT 606 0.5264 MVTMAEEEENGVSIQLEFPKGRVKKIMTLDKDVKRVSSEALFLVSRSTELFLQFLAEKSANVAIEKKRKTVNLEHMRVAVKRHQPTRDFLLDELPPPSQPAKPDKLTQPVVRPKPDAPPPGTRRIDQFFRKPEPQNLAQVQSPENPAQAQSPEVAAQAQSPEVPAQAQSPEIPAQAQSPEIPVQAQSPVPVKRALEGFFTVN 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00080 202 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 17 80 IPR003958 -
Lapu6g00080 202 FunFam Nuclear factor Y, subunit C13 4 95 - -
Lapu6g00080 202 SUPERFAMILY Histone-fold 15 96 IPR009072 GO:0046982
Lapu6g00080 202 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 145 - -
Lapu6g00080 202 MobiDBLite consensus disorder prediction 134 184 - -
Lapu6g00080 202 Gene3D Histone, subunit A 1 95 IPR009072 GO:0046982
Lapu6g00080 202 MobiDBLite consensus disorder prediction 87 189 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00080 7 131 CCAAT-HAP5 Transcription Factor Family AT5G43250 66.400 1.35e-50 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lapu6g00080 CBFD_NFYB_HMF 8.8e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00080 - - vun:114164970 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00080 6 631845 632616 Lapu6g00080 6 631845 632616 ECH