Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00066 ATGGAGTGGAATGCAAAATCTCTGGGACAATGGGACTGGGAGCACTTATTCTTCTTCAATACAAAAGCAACAGAAAATCCCAGGTTACCACCAACTGATTGTAGCAACGAAGCAGATCGAGAAATCAATGTTGGGCTGTTGTATCCATCAGGTGGTAGTGCTTGTTCTGGCTCTGAACTAGTACACGCTTCTTCATCAAGGAGTTCAAAATCGGCTTCCAACAATTCATTGTCAAATGGGGATAGCAAGGCATCGGTATTGACTCTGGAAGGTTCTCAGGATGATTCCACTGGGAAGAAAGAATTGTGCAATGGAGAGCCAGTTGAAACTTCTCAATCAGCAGTGCCTTCTCCAGTCTCTGGTGAACCCCTGCTCACTCTGAAGCTTGGCAAACGGTTGTACTTTGAGGATGTATGCGCAGGAAGTGATTCCAAGAAACCATCTTCCTTTGAGGTTCCCGTTTCATCAGGAAAGAAATATAAAACCAGTAGTCAGAATTTGCAGCATCCAAGCTGCCAGGTGGAAGGCTGTGGCCTTGACCTCTCATCTGCTAAAGATTACCATCGGAAACACAGAGTTTGTGAAGCTCATTCCAAATCCCCTAAGGTGCTTATAGCTGGTTTGGAGCGCCGATTTTGCCAGCAATGTAGCAGGTTCCATGGTCTGTCAGAGTTTGATGACAAAAAAAGAAGCTGCAGAAGACGTCTTTCAGATCACAATGCAAGGCGGCGCAAACCCCAGCCTGACTCAATCCAATTAAATCCATCAGCTTTGTCTTCATCACCTTATGATGGGAGGCAAACAATGAGCCCATTTGCATTTTCAAGAACTGCTACTAATTTGGCGTGGCAGGATATGCACAGCAGCAAGCTTCCCCAGACTAAAGATTTTCTTCCGAAGCCTGCAAAAGTCTTCAATAAGATACCCAGTATTCTCTCCATGTTTTCTGATGATTCCACTGGCCTTCTGACATCCAGAACTATAGCAGCGAAGACTATTGTTCCAGGTTTAGAAGATCCCAATCCCATTACTTCGTGTGATCCAAATGGTGCACAAGATGTTGATCGTGCTCTCTCTCTTCTGTCAAGCAATTCATGGGGTCCATATGAGGCCAAGTCCCTATCCCTGGAACACTCCACTCGAACAAGTGGCATCACTGAGTCTATAACACACTCAATGACGCACCACAACCACCACCACCACCAGCAGCAGCAGCATCGCTTACCACTTGGTTCCTCTTCAGAATATTGGCACGCTGATCATCAACAACAACCATCCCCTTCAACCATGAGCATGTGTATCTCATTCTCAGATTGTGATAGCAACAATCGGTTTCAAGACTTTCAGCTGTTGAGTGCACCCTATGACTCGGGTTTTCCATGCAACCAACTGGATTGA 1398 0.4571 MEWNAKSLGQWDWEHLFFFNTKATENPRLPPTDCSNEADREINVGLLYPSGGSACSGSELVHASSSRSSKSASNNSLSNGDSKASVLTLEGSQDDSTGKKELCNGEPVETSQSAVPSPVSGEPLLTLKLGKRLYFEDVCAGSDSKKPSSFEVPVSSGKKYKTSSQNLQHPSCQVEGCGLDLSSAKDYHRKHRVCEAHSKSPKVLIAGLERRFCQQCSRFHGLSEFDDKKRSCRRRLSDHNARRRKPQPDSIQLNPSALSSSPYDGRQTMSPFAFSRTATNLAWQDMHSSKLPQTKDFLPKPAKVFNKIPSILSMFSDDSTGLLTSRTIAAKTIVPGLEDPNPITSCDPNGAQDVDRALSLLSSNSWGPYEAKSLSLEHSTRTSGITESITHSMTHHNHHHHQQQQHRLPLGSSSEYWHADHQQQPSPSTMSMCISFSDCDSNNRFQDFQLLSAPYDSGFPCNQLD* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00066 465 Gene3D - 162 233 IPR036893 GO:0003677|GO:0005634
Lapu6g00066 465 MobiDBLite consensus disorder prediction 66 93 - -
Lapu6g00066 465 FunFam Squamosa promoter-binding-like protein 14 163 233 - -
Lapu6g00066 465 MobiDBLite consensus disorder prediction 237 265 - -
Lapu6g00066 465 MobiDBLite consensus disorder prediction 142 169 - -
Lapu6g00066 465 ProSiteProfiles Zinc finger SBP-type profile. 169 246 IPR004333 GO:0003677
Lapu6g00066 465 MobiDBLite consensus disorder prediction 247 265 - -
Lapu6g00066 465 MobiDBLite consensus disorder prediction 66 121 - -
Lapu6g00066 465 SUPERFAMILY SBT domain 170 251 IPR036893 GO:0003677|GO:0005634
Lapu6g00066 465 MobiDBLite consensus disorder prediction 148 169 - -
Lapu6g00066 465 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 58 431 IPR044817 GO:0003677
Lapu6g00066 465 Pfam SBP domain 172 245 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00066 Lapu-Chr6 539521 543558 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00066 1 430 SBP-box Gene Family AT5G43270 37.778 3.17e-62 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lapu6g00066 SBP 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00066 - - gmx:100781289 748.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00066 6 539521 543558 Lapu6g00066 6 539521 543558 ECH