Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00062 ATGCCACCTGGTTTGGAGTACAACATCGATGATTTGTTCCAAGAAGCTAAGAAGCGATGGCTCAAGCCTGTGGAAGTGCTTTACATTCTACGGAATCACGACATGTGCGAGCTTACCCACCAGCCCCCTCGTCAGCCAGCTGGTGGATCCCTATATCTGTTTAATAGAAGAGTCACGCGTTTCTTCCGTAAAGATGGTCATAACTGGCGGAAGAAAAGAGATGGAAGAACTGTGGGAGAAGCACATGAACGACTTAAGGTTGGAAATGTAGAAATCCTAAACTGTTACTATGCACATGGAGAGGAGAACCGTACTTTTCAGAGACGGAGCTATTGGATGTTGGAGCCGGAATATGAGCATATTGTTCTGGTGCATTATAGAGAAACAAGTAAGGGGAAATCCAATTCTGAAACTGTCACGCAATTGTCATCGGGTTCCTCTCTTGTTTTTAGTCAGAGTCATAGCCCTGCTCACAACCCAGGGACAGCATCCATGTTTGGTGATTCATGTGAACCTAATCACAATTTCTCGAGTCCTGGTTCTTTAGAAGTTACATCTGAAGCACAAGCCTTGCGCCAATTGGAAGAACAGCTAAATGAGGACAGCTTCAATGAAAGGGTGATTTATAAGCACGATAAGTCTGCTACTTTGTCTGGACCAAATGATCAAGGAGAACTTTTTCATAGATATAATGAAAGACAAGATGACTGTGACACCTTCTATCATGACTTACTTGATGATTATCCTCATGGAAATGAAAAAACTGTATACTGGACCGAGGTGCTTGAAGCATGCAAGCCCCTACCTGTGACCAATTTACAAGATCAATATGAATATGAGGCATTTGAAAATGAAGAGTCATTATTTTCTGCAGGAAGGGAAAGGATTGCCAATGTGGAAAACAATCAGTGGCTAAACTCCGACAGTAATAATGTTGAGAACTCTGTTTTTCCATTTCCTCAAGGCGACAGTGGAGTCAAATTTCCTCCATGTTCTCTGGTAGAAACTCCAGTAAGTACCTCTGACTACTTTGAAACATTCTTTGACCAAACCCAAATTCAAGAACTAGATTCAAGCTTGAACGTTGTACAGAAACAGAAATTTTCAATTAGGGCAGTCTCCCCAGAATACTGCTATGCCACTGAGACTACAAAGGTTATCATTATTGGGTCATTTCTCTGCCATCACTTGGACTCTACCTGGGCCTGTATGTTTGGTGACATTGAAGTTCCTGCTGAGATTATTCAGGATGGTGTAATCTGTTGTGAAGCCCCATCCAATCTTCTTGGAAAGGTTAATTTGTGCATTACTTCAGGAAACAGGGTGCCTTGCAGTGAAGTGAGTGAGTTTGAGTTTCGAAATAAGACTACTAGTTGCACTCGCTGTAATTCATTGGAAACAGAAGATGGTAGAAGTCCAGAAGATCTGTTATTACTTGTTCGATTTGCAGAGATGCTCCTCTCTGCTTCAACTAAAAAGGGTGACAGCACAGAAACGGGAAGTCATCTTTCAACAGAAGAGAAAGATGGTGATGATTCATGGAGCTATATTATTGACACTCTTCTAGCTGGCACTGGAAAATCATCTGATACTGTTAACTTGCTTCTAGAAGAGCTGCTGAAGGATAAGCTGCAGCTGTGGCTCTCTAACCGATCCCATGAAAGAGATGAAGGGACAGACTGTTCTTTGTCCAAGAAAGAGCAGGGGATTATACACATGGTTTCTGGGTTGGGTTTTGAGTGGGCCTTGAACCCCATTCTCAGTAGTGGTGTGAATATAAATTTCCGTGACATCAATGGGTGGACCGCCCTTCATTGGGCTGCACGGTTTGGGAGGGAAAAAATGGTTGCTTCACTTATAGCTTCTGGTGCATCTGCTGGAGCGGTGACAGATCCAAGTTCACAAGATCCAGCCGGTAAAACTGCTGCGTCTATTGCAGCCTCCCATGGCCATAAGGGACTGGCAGGTTATCTTTCTGAGGTACACCTAACAAGCCATTTGTCATCCCTCACATTGACAGCGAGTGAGATTTCTAAAGGATCTTCTGAGCTTGAAGCGGAGTTATGTAGTTTCTCTAAAGAAAATCTTGTGGCCAGTGAGGATCAGGTTTCACTAAAAGCTTCCTTGGATGCTGTCAGAAATGCAGCTCAGGCAGCTGCACGCATACAAGATGCTTTTCGGGCACATTCTTTTAGAAAACGGAAAGAAAGAGAATCTGCAGCTGCCGCCGCCGCTGCAGCTGCCTTGTCAATTCAGAAGAGATATCGAGGTTGGAAAGGTCGCAAAGAATTCTTAGCATTTCGCCAGAAAGTAGTTAAGATACAGGCCATTGTGAGGGGTTACCAGGCTCGGAAGCAATACAAACTAATATTATGGGCAGTTGGAATCTTGAATAAGGTTGTGCTACGATGGAGGAGAAAACGAGTTGGTATAAGTAGTGTCCGGCAAGAAATGGATTCAAATGAAGAAGAAAGTGATGATGAAGATTTTCTCAAAGTGTTTCGAAAGGAAAAAGTAAATGCAGCAATTGAGAAGGCTTTGAAGCGGGTGCTTTCCATGGTCCGTTCTGACGATGCTCGTCATCAATACAGGCGCTTGCTTTCATTGTATCGTCAAGCCAAGACTGAACGTGACAGCACAAGTGATGAAGCACCGTTATCAACTTCGGAAGAGGATGCTGCCGATATGGAAGACGATGACTTGAATCAGTTTTTGGAAAAGTTCTGGGGTTCCTAG 2736 0.4349 MPPGLEYNIDDLFQEAKKRWLKPVEVLYILRNHDMCELTHQPPRQPAGGSLYLFNRRVTRFFRKDGHNWRKKRDGRTVGEAHERLKVGNVEILNCYYAHGEENRTFQRRSYWMLEPEYEHIVLVHYRETSKGKSNSETVTQLSSGSSLVFSQSHSPAHNPGTASMFGDSCEPNHNFSSPGSLEVTSEAQALRQLEEQLNEDSFNERVIYKHDKSATLSGPNDQGELFHRYNERQDDCDTFYHDLLDDYPHGNEKTVYWTEVLEACKPLPVTNLQDQYEYEAFENEESLFSAGRERIANVENNQWLNSDSNNVENSVFPFPQGDSGVKFPPCSLVETPVSTSDYFETFFDQTQIQELDSSLNVVQKQKFSIRAVSPEYCYATETTKVIIIGSFLCHHLDSTWACMFGDIEVPAEIIQDGVICCEAPSNLLGKVNLCITSGNRVPCSEVSEFEFRNKTTSCTRCNSLETEDGRSPEDLLLLVRFAEMLLSASTKKGDSTETGSHLSTEEKDGDDSWSYIIDTLLAGTGKSSDTVNLLLEELLKDKLQLWLSNRSHERDEGTDCSLSKKEQGIIHMVSGLGFEWALNPILSSGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGAVTDPSSQDPAGKTAASIAASHGHKGLAGYLSEVHLTSHLSSLTLTASEISKGSSELEAELCSFSKENLVASEDQVSLKASLDAVRNAAQAAARIQDAFRAHSFRKRKERESAAAAAAAAALSIQKRYRGWKGRKEFLAFRQKVVKIQAIVRGYQARKQYKLILWAVGILNKVVLRWRRKRVGISSVRQEMDSNEEESDDEDFLKVFRKEKVNAAIEKALKRVLSMVRSDDARHQYRRLLSLYRQAKTERDSTSDEAPLSTSEEDAADMEDDDLNQFLEKFWGS* 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00062 911 ProSiteProfiles IQ motif profile. 744 773 IPR000048 GO:0005515
Lapu6g00062 911 Pfam IPT/TIG domain 369 440 IPR002909 -
Lapu6g00062 911 Pfam IQ calmodulin-binding motif 769 788 IPR000048 GO:0005515
Lapu6g00062 911 Pfam IQ calmodulin-binding motif 746 764 IPR000048 GO:0005515
Lapu6g00062 911 ProSiteProfiles Ankyrin repeat profile. 599 631 IPR002110 GO:0005515
Lapu6g00062 911 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 8 876 - -
Lapu6g00062 911 SUPERFAMILY Ankyrin repeat 569 662 IPR036770 -
Lapu6g00062 911 SMART ANK_2a 599 628 IPR002110 GO:0005515
Lapu6g00062 911 SMART ANK_2a 638 667 IPR002110 GO:0005515
Lapu6g00062 911 SMART CG_1_2 12 130 IPR005559 GO:0003677
Lapu6g00062 911 FunFam Calmodulin-binding transcription activator 2 743 791 - -
Lapu6g00062 911 SUPERFAMILY E set domains 370 453 IPR014756 -
Lapu6g00062 911 MobiDBLite consensus disorder prediction 873 898 - -
Lapu6g00062 911 FunFam Calmodulin-binding transcription activator 4 isoform A 479 664 - -
Lapu6g00062 911 SMART iq_5 743 765 IPR000048 GO:0005515
Lapu6g00062 911 SMART iq_5 714 736 IPR000048 GO:0005515
Lapu6g00062 911 SMART iq_5 766 788 IPR000048 GO:0005515
Lapu6g00062 911 Pfam Ankyrin repeats (3 copies) 583 659 IPR002110 GO:0005515
Lapu6g00062 911 Gene3D - 527 668 IPR036770 -
Lapu6g00062 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 719 794 IPR027417 -
Lapu6g00062 911 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Lapu6g00062 911 ProSiteProfiles IQ motif profile. 768 791 IPR000048 GO:0005515
Lapu6g00062 911 Gene3D Immunoglobulins 363 458 IPR013783 -
Lapu6g00062 911 MobiDBLite consensus disorder prediction 133 181 - -
Lapu6g00062 911 ProSiteProfiles IQ motif profile. 715 744 IPR000048 GO:0005515
Lapu6g00062 911 Gene3D - 743 791 - -
Lapu6g00062 911 MobiDBLite consensus disorder prediction 132 181 - -
Lapu6g00062 911 ProSiteProfiles Ankyrin repeat region circular profile. 599 625 - -
Lapu6g00062 911 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00062 Lapu-Chr6 510224 521521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00062 258 901 CAMTA Transcription Factor Family AT1G67310 52.693 0.0 594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Lapu6g00062 CG-1 8e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00062 K21596 - gmx:100791430 1388.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00062 6 510224 521521 Lapu3g02564 3 47877744 47887072 PCT