Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00046 ATGGTCACTTTTAGAAGCTATTTGATTTATAGAATAACAGAGAACCCTTTCAAAATCTTCAGATTTCGTAGCACCTTCTATTTCTCGCTAGAAGCTACATGCTGCCATATATTCGGTGGCTTGAGATATTATCATTCTGGGTCAGAGTGGGGTGAAAATCAGAAATTGAATCCAAAGGAGAAGCCAAACAGGGTGGGGCTTTTCTGGGACTTGGACAATAAACCACCCAATGCCATCCCACCTTATGAAGTTGCCAATAAGCTGAGAATAGCTGCATCTTCCTTTGGGATTGTTCGTTACATGGTGGCTTATGCAAACAGCCACACTTTTAGTCATGTTCCTCAATGTGTACAGGAGAAAAGGAAAGAGAGGGAACTGTTGTATCGTTTAGAGAACAAGGGTGTCATCAAGCCAAATGAACCTTATCGTTGTCGGGTTTGTGGGAGAAAGTTTCATACTAATGACAAGCTTGTCAACCATTTCAAGCAATTGCATGAGCGTGAGCACGGGAAAAGGATGAACCAAATTGAGTCTGCTAGAGGGAGCAGGAAGGTGAAGTTGGTGGCTAAGTATTCTATGAAAATGGAAAAGTATAAGAAGGCTGCAAGTGCTATTCTCACACCCAAAGTGGGGTATGGTTTGGCAGATGAGCTCAAACGGGCCGGGTTTTGGGTTCAAACTGTGTTGGACAAGCCACAGGCTGCAGATCGGGCGTTGCGAAGCCACATGGTGGATGTCATGGATCATAGGCGGGTTGAGTGTGTGGTTCTTGTGTCTGATGATTCTGATTTTGTTGATGTGATAAAGGAAGCAAGGCTCCGATGTCTGAAGACGGTTGTTGTCGGGGATATTGATGACGGTGTGTTGAAGAGGACTGCTGATACTGCCTTTTCTTGGGAAGAAATTCTGATGGGGAAGGCTAAAAAACAAGCTGTTTCGGTTGTGAAAAACTGGAAGGATCGTGATATTTTGAAGAGGTTAGAGTGGACATATAACCCAGATGCTGATAAAAAGAATTTCAATGTGGATGATACCATTGCTGAAGCATCTGAAGATGATAATATTGAAGATACCTGTGATGAAGTTGATGATGTCTATAAGGATGACAGAGGTTCTTGGTGGGAGTTATATTCTGACAATGATATCACAAATTGA 1155 0.4268 MVTFRSYLIYRITENPFKIFRFRSTFYFSLEATCCHIFGGLRYYHSGSEWGENQKLNPKEKPNRVGLFWDLDNKPPNAIPPYEVANKLRIAASSFGIVRYMVAYANSHTFSHVPQCVQEKRKERELLYRLENKGVIKPNEPYRCRVCGRKFHTNDKLVNHFKQLHEREHGKRMNQIESARGSRKVKLVAKYSMKMEKYKKAASAILTPKVGYGLADELKRAGFWVQTVLDKPQAADRALRSHMVDVMDHRRVECVVLVSDDSDFVDVIKEARLRCLKTVVVGDIDDGVLKRTADTAFSWEEILMGKAKKQAVSVVKNWKDRDILKRLEWTYNPDADKKNFNVDDTIAEASEDDNIEDTCDEVDDVYKDDRGSWWELYSDNDITN* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00046 384 CDD PIN_LabA-like 153 283 - -
Lapu6g00046 384 Gene3D - 56 303 - -
Lapu6g00046 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 170 IPR013087 -
Lapu6g00046 384 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 52 381 - -
Lapu6g00046 384 Pfam NYN domain 215 294 IPR021139 GO:0004540
Lapu6g00046 384 SMART c2h2final6 142 165 IPR013087 -
Lapu6g00046 384 ProSitePatterns Zinc finger C2H2 type domain signature. 144 165 IPR013087 -
Lapu6g00046 384 SUPERFAMILY beta-beta-alpha zinc fingers 138 168 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00046 Lapu-Chr6 407326 408519 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00046 53 382 C2H2 Transcription Factor Family AT4G12240 59.517 1.10e-139 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu6g00046 NYN 5.6e-07 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00046 - - gmx:100785257 656.366