Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00028 ATGGAGGGAACAGGGTCCGGGTCAGGTTCAACAGCTCCGGCGCCGTTCCTACTGAAGACATACGAGATGGTGGATGATTCATCAACGGAGGAAATAGTGTCATGGAGTTCCTCCAACAACACCTTCATCGTCTGGAATCCTGCTGAATTCTCTCGCCTTCTTCTTCCCACTTTTTTCAAGCACAACAACTTCTCCAGCTTCATCCGCCAGCTTAATACCTATGGATTTCGAAAAGTACATCCTGAGCGATGGGAGTTTGCTAATGACGATTTTCTGAAAGATCAAAAGCATCTCTTAAAGAATATTCACCGCAGGAAACCTATCCATAGTCACTCACTCACACAACCTGTTGCGGATTCAGAAAGGTTGGCATTTGAGGAACAGATAGAGAAACTTTCACGCGACAAGACCTCCATTCAGTCCAATATTTTCCGCTTCAAACAACACCACTCCGCTGCCAAGACTCATCTTCAAGATCTACGCCTGCGATTGGATGCCATGGAAGAGAGGCAGCAAAATCTCCTCACCTTCTTTCAAAAGGCTCTTCACAATCCTACTCTTGTTCAACAAATCACTCGCAAAATCGAGTCCATGGATTTGCTGGCGTATAACAAGAAAAGGCGATTACCTCCTCAGCTTGATGACCATGGCCACCACTTGCAGCCCGCTGCTGGAAACACCTTCGTTGAAAGTTTTGGAATGGAATTTGAAAATATTTCTCATCGAGATTTCTCCAATAAACTCACACTGGAATTGTCACCTGCTGTTTCAGATATGAACTTGGTGGTGTCATGTAGCACACAGAGTTCAAATGAAGACGGAGAAAGCCCACATAAGATGATGCTACCTGAGATAGCAGAGCTTGCACAAACTGGAGAATCTCTTACTTTTCAGATGCATTCCTGCTTATCACGAACCGCCACAGTTGCTGAGAGCCCCAAATTGGACTCAAATTATGACGATGGTGACAGTTATATATCCTGTCTTTTGAATCTGTCTCTGGCATCTTCTCCATTACAAGTCAAAAGAAATCCATGCACAGATAGATCCCCATCCCTAATAGACTGTCCAGAATTTGGCAAATTGGAAGGATCAAAATCTTGTGCCAATGATAGTAAAGAATGTGATGCTGGAGCTTCTTCAAGCAGAAATCTAAACGAGGTTACTAATTTAGCTCAGGTCCCCCCAACTGCTCCAGTTAGAGTAAATGATATGTTCTGGGAACAGTTCCTTACTGAAAGACCAGGATGTTCAGACAACGAAGGCTCAATGTCCACCCACAAAGTAAATGCATATGTTGCTGAGCAAGATGAAGCGCGCTCAGTTCATGGAATCTCTGGAAATGTTAAGGACATGGATCAGCTCACACTCTGA 1374 0.4418 MEGTGSGSGSTAPAPFLLKTYEMVDDSSTEEIVSWSSSNNTFIVWNPAEFSRLLLPTFFKHNNFSSFIRQLNTYGFRKVHPERWEFANDDFLKDQKHLLKNIHRRKPIHSHSLTQPVADSERLAFEEQIEKLSRDKTSIQSNIFRFKQHHSAAKTHLQDLRLRLDAMEERQQNLLTFFQKALHNPTLVQQITRKIESMDLLAYNKKRRLPPQLDDHGHHLQPAAGNTFVESFGMEFENISHRDFSNKLTLELSPAVSDMNLVVSCSTQSSNEDGESPHKMMLPEIAELAQTGESLTFQMHSCLSRTATVAESPKLDSNYDDGDSYISCLLNLSLASSPLQVKRNPCTDRSPSLIDCPEFGKLEGSKSCANDSKECDAGASSSRNLNEVTNLAQVPPTAPVRVNDMFWEQFLTERPGCSDNEGSMSTHKVNAYVAEQDEARSVHGISGNVKDMDQLTL* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00028 457 SMART hsfneu3 12 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu6g00028 457 PRINTS Heat shock factor (HSF) domain signature 54 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu6g00028 457 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu6g00028 457 PRINTS Heat shock factor (HSF) domain signature 16 39 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu6g00028 457 Coils Coil 150 170 - -
Lapu6g00028 457 ProSitePatterns HSF-type DNA-binding domain signature. 55 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu6g00028 457 SUPERFAMILY "Winged helix" DNA-binding domain 12 105 IPR036390 -
Lapu6g00028 457 Pfam HSF-type DNA-binding 16 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu6g00028 457 Gene3D - 9 106 IPR036388 -
Lapu6g00028 457 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 241 IPR027725 -
Lapu6g00028 457 FunFam Heat shock transcription factor 1 9 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00028 Lapu-Chr6 276912 278944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00028 16 457 HSF AT4G13980 48.511 4.45e-131 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lapu6g00028 HSF_DNA-bind 2.3e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00028 K09419 - gmx:100816484 548.125