Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00019 ATGGCGTTTTGTAATAAGGTTGGAAATGCCTTGAGGCAGGGTGCTGCTCGCAGCTCACAAACACCTGTTGCATCCATGCTTAATTATATTCGTTGCATGTCTTCAAGCAAGCTTTTCATCGGAGGACTTTCGTATGGAGTTGATGACCAGTCTCTCAAGGACGCATTTTCTAGCTTTGGAGACGTTGTTGAGGCAAGAGTTGTAACTGATAGAGACACGGGAAGATCAAGGGGATTTGGATTTGTCAACTTCTCCAGTGACGAGTCTGCAAGTTCGGCACTCTCTGCAATGGATGGGCAGGATCTTAATGGCCGAAACATTCGGGTATCATATGCAAATGATCGACCTTCTGGACCACGATCTGGGGGCGGTGGTGGTTATGCTTCTCGTAATGGTGGTTGTGGAATGCTGCGGTTTCTGCCCTAA 426 0.4765 MAFCNKVGNALRQGAARSSQTPVASMLNYIRCMSSSKLFIGGLSYGVDDQSLKDAFSSFGDVVEARVVTDRDTGRSRGFGFVNFSSDESASSALSAMDGQDLNGRNIRVSYANDRPSGPRSGGGGGYASRNGGCGMLRFLP* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00019 141 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Lapu6g00019 141 FunFam Glycine-rich RNA-binding protein 2 25 138 - -
Lapu6g00019 141 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Lapu6g00019 141 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 33 132 - -
Lapu6g00019 141 SUPERFAMILY RNA-binding domain, RBD 33 133 IPR035979 GO:0003676
Lapu6g00019 141 Gene3D - 16 137 IPR012677 -
Lapu6g00019 141 SMART rrm1_1 37 110 IPR000504 GO:0003723
Lapu6g00019 141 CDD RRM2_NsCP33_like 37 112 - -
Lapu6g00019 141 MobiDBLite consensus disorder prediction 110 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00019 Lapu-Chr6 229612 230861 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00019 35 124 Eukaryotic Initiation Factors Gene Family AT4G34110 41.111 1.60e-15 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00019 - - gmx:100527220 212.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00019 6 229612 230861 Lapu6g00019 6 229612 230861 ECH