Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00010 ATGCGAACTTCGTGGGCTGATTTGGCTGCGAATTCCGCGCCTGAAAATGCGGGAACATCCAACTCCACAGCTCCGTCGCGGCCCGTTTATGTGCCTCCGCATCTGAGGAACCGTGCTGCATCAGCATCAGCAGAATCCTCCCCTGCTCCTCCACCACCCAATGTGAGTACTAATAATAATGCCGGATCACGGTGGGGTGCGCCCAGAAACGGGTGGGGAAACAGAACCGGTGGTTGGGATCGGCGGGAAGTGAACCCCTTCGGAGATCAGGAGGATGCAGCTGAAGAGGGAGCAGCAGCTTTTGGCGAGGAGCAGGAAAACACGGGAATTAATTTTGATGCTTACGAGGACATTCCTGTTGAGACGAGCGGTGAAAACGTGCCCCCAGCTGTGAATACTTTTGCTGAGATTGACTTGGGCGAGGCTCTTAATCAGAACATTAGACGCTGCAAATATGTGAAGCCAACGCCCGTTCAGCGGCATGCCATACCCATATCCCTTGGCGGACGGGATTTGATGGCTTGTGCGCAGACTGGTTCCGGAAAGACTGCGGCATTCTGTTTCCCTATTATCAGTGGCATTATGAGAGGTCAAGGCCAGCCCCTCCAGAGGCCCCCTCGCGGCGTCCGTACAGTCTATCCACTTGCCCTTGTTCTCTCGCCGACTAGGGAGCTATCCGTGCAAATACTTGAAGAGGCTAGGAAGTTTTCGTACCAGACAGGGGTTAGGGTCGTTGTTGCCTATGGTGGAGCCCCTATAAACCAGCAGCTACGGGAACTTGAGAGAGGGGTGGATATTCTTGTTGCAACTCCAGGAAGATTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCATTGCAGATGATCAGATATTTGGCCTTAGATGAGGCAGATCGAATGCTGGATATGGGTTTTGAACCTCAAATAAGGAAGATAGTAGAACAAATGGACATGCCTCCACCAGGTGCCAGACAGACTATGTTGTTCAGTGCCACATTTCCAAAAGAGATTCAGAGACTAGCCTCTGATTTCCTTTCAAATTATGTTTTTCTGGCTGTTGGAAGAGTGGGCTCAAGTACCGATTTGATTGTTCAAAGAGTTGAGTACGTTCAAGAGTCTGACAAGAGAAGTCACCTTATGGATCTTCTTCATGCGCAGAGGGCAAATGGTGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTCGTGGAGACAAAGAAGGGAGCTGATGCTCTTGAGCATTGGTTGTGTCGTAATAGTTTTCCAGCAACTACTATTCACGGTGACAGGACACAACAGGAAAGAGAATTGGCATTAAGATCATTTAAAACTGGCAACACCCCCATATTGGTTGCAACTGATGTGGCTGCTCGGGGTCTTGACATTCCTCATGTTGCCCATGTGGTTAACTTTGACCTTCCTAATGATATTGATGATTATGTACACCGTATTGGAAGGACAGGGCGAGCAGGAAAGAAAGGCCTTGCAACTGCGTTCTTTAATGACAACAATGCGTCATTAGCTAGGTCTTTAGCAGATCTGATGCAAGAAGCGAATCAAGAAGTACCTGATTGGTTGTCACGGTATGCTGCACGCTCTTCTTTTGGTGGTGGACGGAACCGTCGAACAGGAGGAAGTCGTTTTGGTGGCCGTGACTTTCGAAGAGAAGGTTCTTTTAGTAGGGGTGGTTCTGATTACTACAGTACAGGAAACAACAGTGGTGGATATGGCACTTCTGGTGGGTATGGTGGAGGATATGGTCCTGGGGTAACCAGTGCATGGGACTGA 1782 0.4916 MRTSWADLAANSAPENAGTSNSTAPSRPVYVPPHLRNRAASASAESSPAPPPPNVSTNNNAGSRWGAPRNGWGNRTGGWDRREVNPFGDQEDAAEEGAAAFGEEQENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMRGQGQPLQRPPRGVRTVYPLALVLSPTRELSVQILEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPKEIQRLASDFLSNYVFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCRNSFPATTIHGDRTQQERELALRSFKTGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARSLADLMQEANQEVPDWLSRYAARSSFGGGRNRRTGGSRFGGRDFRREGSFSRGGSDYYSTGNNSGGYGTSGGYGGGYGPGVTSAWD* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00010 593 CDD SF2_C_DEAD 362 498 - -
Lapu6g00010 593 Gene3D - 88 352 IPR027417 -
Lapu6g00010 593 MobiDBLite consensus disorder prediction 1 86 - -
Lapu6g00010 593 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 361 528 IPR001650 -
Lapu6g00010 593 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 163 350 IPR014001 -
Lapu6g00010 593 MobiDBLite consensus disorder prediction 1 27 - -
Lapu6g00010 593 Pfam DEAD/DEAH box helicase 156 339 IPR011545 GO:0003676|GO:0005524
Lapu6g00010 593 Gene3D - 353 532 IPR027417 -
Lapu6g00010 593 FunFam Probable ATP-dependent RNA helicase DDX4 94 352 - -
Lapu6g00010 593 CDD DEADc_DDX3_DDX4 133 356 IPR044763 GO:0003724|GO:0005524
Lapu6g00010 593 SMART ultradead3 151 365 IPR014001 -
Lapu6g00010 593 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 132 160 IPR014014 GO:0003724
Lapu6g00010 593 SMART helicmild6 408 489 IPR001650 -
Lapu6g00010 593 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 99 528 - -
Lapu6g00010 593 FunFam ATP-dependent RNA helicase RhlB 353 532 - -
Lapu6g00010 593 MobiDBLite consensus disorder prediction 533 554 - -
Lapu6g00010 593 Pfam Helicase conserved C-terminal domain 374 489 IPR001650 -
Lapu6g00010 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 505 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00010 Lapu-Chr6 153432 161626 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00010 116 521 Eukaryotic Initiation Factors Gene Family AT3G19760 31.204 3.10e-61 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00010 K11594 - gmx:100781668 971.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00010 6 153432 161626 Lapu6g00010 6 153432 161626 ECH