Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00007 ATGGGAGATATCGAGAAAGAGGGAGTGTTGTCGAGGGAGAAGGGAGAAGAGGAAGAAGAAGCGGAAGCCTCGGTGGAGATTTGGAAGTACGTATTTGGATTTGTGGAAATGGCAGTGGTGAAGTGTGCGATAGAGCTTGGCATAGCTGAAGCCATAGAAAAGCATGGAAGGCCGATGACAGTGTCGGAGATATCATCAACTCTAGGCTGTGATCCTTCTCATCTTAAACGCATAATGAGGTTCCTAGCGCACAGAAAGATATTCAAAGCCATACCCATGGGCACCAGCAGTGGGTATTCACAGACACCTCTGTCTCGGCGGCTGATGAGGGAGGGCCAACAAAGCATGGCTGCCTTGCTTTTGCTGGAGAGTAGTCCTGTAATGCTCGCACCTTTTCACAGTCTAAGCGCTCGCGTCATGCCCAATGCCCGTCCCGCGTTTCAAAATGTTCACGGTGAAGACGTGTGGCGCTATGCTGCCGCAAATCTCGACCACAGCAACCTCATCAATGAAGCAATGGCATGTGATGCTAAGCTTGTTATGCCTGTCATCATTGAAACTTGCAGCGAGGCATTTCATGGCGTCCAGTCCGTGGTGGACGTGGGTGGGGGCAACGGCACCGCCATGCGCATCCTTCTTCGGGCTCTCCCTTCCATTGGAGCCATCAATTTCGATCTTCCCCACGTCATTGCCCAGGCCCCTCACTCGGATGGCCTCCAACACGTGGCAGGCGACATGTTTCAGAGTGTTCCTAAGGCCGATGCTGTTTTCCTCAAGTGGGTTTTGCACGACTGGTCGGACGAAGAGTGCATCGAAATCTTGAAGAAGTGTCGGGAAGCGATCCCAAAGGAAAATGGAAGGGTCATCATCGTGGAGGCGGTGATCGAAGAGGAAGGAGGAGGAGGAGGAGGAGAGAAGCAGAAGAAGGGGTTGGAGGACGTAGGACTTATGCTGGACATGGTGATGATGTCGCACACTAACTTTGGGAAAGAGCGGACCCTTAAAGAGTGGGAATATGTCATCAAAATGGCAGGATTTAGCTCCTTCACTGTCAAACCCATTCACGCTGTGCAGTCTGTCATTTTGGCTTTCTACTGA 1098 0.5164 MGDIEKEGVLSREKGEEEEEAEASVEIWKYVFGFVEMAVVKCAIELGIAEAIEKHGRPMTVSEISSTLGCDPSHLKRIMRFLAHRKIFKAIPMGTSSGYSQTPLSRRLMREGQQSMAALLLLESSPVMLAPFHSLSARVMPNARPAFQNVHGEDVWRYAAANLDHSNLINEAMACDAKLVMPVIIETCSEAFHGVQSVVDVGGGNGTAMRILLRALPSIGAINFDLPHVIAQAPHSDGLQHVAGDMFQSVPKADAVFLKWVLHDWSDEECIEILKKCREAIPKENGRVIIVEAVIEEEGGGGGGEKQKKGLEDVGLMLDMVMMSHTNFGKERTLKEWEYVIKMAGFSSFTVKPIHAVQSVILAFY* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00007 365 PIRSF O-mtase 5 365 IPR016461 GO:0008168
Lapu6g00007 365 PANTHER O-METHYLTRANSFERASE 37 349 IPR016461 GO:0008168
Lapu6g00007 365 FunFam O-methyltransferase family protein 11 108 - -
Lapu6g00007 365 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 28 365 IPR016461 GO:0008168
Lapu6g00007 365 Pfam Dimerisation domain 39 83 IPR012967 GO:0046983
Lapu6g00007 365 SUPERFAMILY "Winged helix" DNA-binding domain 18 111 IPR036390 -
Lapu6g00007 365 Pfam O-methyltransferase domain 133 347 IPR001077 GO:0008171
Lapu6g00007 365 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 362 IPR029063 -
Lapu6g00007 365 FunFam O-methyltransferase family protein 110 364 - -
Lapu6g00007 365 Gene3D - 9 108 IPR036388 -
Lapu6g00007 365 CDD AdoMet_MTases 198 291 - -
Lapu6g00007 365 Gene3D Vaccinia Virus protein VP39 110 364 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00007 Lapu-Chr6 135415 136957 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00007 40 351 Monolignol Biosynthesis Gene Families AT5G54160 35.714 2.85e-63 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00007 K22588 - gmx:100782951 523.857