Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00005 ATGAGAGGAAGGAGCTACAGTCCTTCGCCTCCGCGTTACAGCAGAAGAGGCGGAGGAAGGAGTCCCAGCCCTAGAGGCCGATACCCTCCCCGTCCTCGACAACAAGATCTCCCTACCAGCCTTCTTGTTCGTAACCTTCGCCACGACTGCAGGCCCGAGGATCTTCGCAGACCTTTTGGTCAATTTGGTCCTCTCAAGGACATTTACCTGCCTAAGGATTACTACTCTGGAGAACCTCGTGGGTTTGGTTTTGTCCAATACGTGGATCCTGCTGATGCAGCCGATGCTAAATATCATATGGATGGTCAAATTCTTCTTGGTCGGGAGCTCACTGTTGTCTTTGCTGAGGAGAATAGAAAGAAGCCAACTGAGATGAGGTCAAGAGAGAGAAGGGGCCGATTTTATGATCGTAGGAGGTCTCCTCCTCGTTACTCTCGTTCTCGATCTCCTCCACCACCACGCCATAGATCTCGTTCTCGCAGTCGTGACTATTATTCCCCTCCTCCTAAACGAAGGGAGTATTCTAGATCTGTCTCCCCTGAGGATAGAAGGTACAGTCGAGAAAGATCATATTCGCAGCATAGTAGGGAGAGGTCATACTCACGCACTCCACCTTATAATGGGGGCTCGAGGAGTCGTAGTCAGAGTCCTGCAAAGGGTCCAGGTCGGAGCAGAAGTCCAAGTCTGGACCGTGATGTTAGGGAATCAGCCCGTGGTAGGTCCCCCAGTCAGTGA 735 0.5184 MRGRSYSPSPPRYSRRGGGRSPSPRGRYPPRPRQQDLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYSGEPRGFGFVQYVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPTEMRSRERRGRFYDRRRSPPRYSRSRSPPPPRHRSRSRSRDYYSPPPKRREYSRSVSPEDRRYSRERSYSQHSRERSYSRTPPYNGGSRSRSQSPAKGPGRSRSPSLDRDVRESARGRSPSQ* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00005 244 FunFam - 4 131 - -
Lapu6g00005 244 SUPERFAMILY RNA-binding domain, RBD 38 145 IPR035979 GO:0003676
Lapu6g00005 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Lapu6g00005 244 SMART rrm1_1 40 113 IPR000504 GO:0003723
Lapu6g00005 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 110 IPR000504 GO:0003723
Lapu6g00005 244 MobiDBLite consensus disorder prediction 119 244 - -
Lapu6g00005 244 MobiDBLite consensus disorder prediction 119 143 - -
Lapu6g00005 244 MobiDBLite consensus disorder prediction 197 222 - -
Lapu6g00005 244 MobiDBLite consensus disorder prediction 1 39 - -
Lapu6g00005 244 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 38 231 - -
Lapu6g00005 244 Gene3D - 4 131 IPR012677 -
Lapu6g00005 244 MobiDBLite consensus disorder prediction 156 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00005 Lapu-Chr6 120588 124085 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00005 39 167 Eukaryotic Initiation Factors Gene Family AT4G34110 27.481 3.07e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00005 K12900 - gmx:100775883 322.783