Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01643 ATGTCGATGCTGCTGAGGAAGGCCTGGGAAATGGTGTTGTGGAGATCCGATTCATCGACGTCAGCATCAGCATCGTCATCAACAATAACAACAATAACAACATTTTCACCAGAAGTTGCACGTTCTGACATCGGTGAATTGGAGCAGCTACCCAGTGACATCTTGATGCAAATTCTGAAGCTTTTGGGTCCAAAAGCGGTTGCAAGATTAAGCGTGGTTTGCAAGAGTTTGAGATACATTGTGTCTGATAACAGACTTTGGATTTATTTCCTTCAGACCCATCAGGCTGAACCTTCTGGGGATTCTGTCTTCTTTGCTGAGACCACCTTGAGTTCTGGCTACCCTCTTCCAGCTTACACTGGCCACTGGCCCCAGCTATCATTCAAGCATATTTATGGCCAGAGAGCACAAGTTCCTGGTTCTATTATTATTGATGGTGGTTCTGGCTACTGCAAATTTGGCTGGAGCAAATACGAAAGTCCATCTGGTCGATCAGCAACGTTTCTGGAGTTTGGTAACATTGAGTCTCCAATGTATACTAGACTTCGACATTTTTTCGCAACTATTTATAACAGGATGCAGGTGAAACCAAATAAACAACCAGTTATTGTTTCGGTACCAATATGTCATTATGAAGATACTCACTCCGCAAAAGCTTCAAGACGACAGCTTAAAGAGGCAATCTATGCTTCCTTGTTTGACATGAATGTCCCTGCTGTTTGTGCTGTCAACCAGGCCACTCTAGCTCTGTACGCTGCGAAACGAACTTCTGGAATAGTTGTTAATATAGGTTTTCAGGTCACTTCTATAGTTCCAATTTTAAATGGTAAAGTACTGCGCAAGGTGGGTGTCGAAGTTGTGGGGCTGGGAGCACTGAAACTTACTGGATTTCTCAGGGAGAAGATGCAATTGAATAACTTAACTTTCCAATCTTTGTACACCGTTCGCTCACTGAAAGAGAAGCTATGCTATGTTGCACTTGATTATGAAGCTGAGCTAGCAAAAGATACAAAAGCATCATACGAAGCTGCAGGAGAAGGATGGTTTACCCTCTCAAAAGAGAGGTTTCAGACAGCAGAGATCTTATTCCAGCCTCATTTTGCTGGAGTGCAAGCAATGGGTCTGCACCAAGCAATAGCTCTGTGTGTGGAACATTGCCATTCTGCAGATTTACCAGGTGACAGTGATTGGTACAAGACTATAGTGTTATCTGGGGGGACTGCATGCTTACCTGGTTTGGCTGAAAGGGTAGAGAAGGAACTCCATGCCTTACTTCCTCCCTACATGTTCAAGGGAATTAGAGTCATACCTCCTCCATATGGTGCTGATACGCCATGGTTTGGAGCTAAGATTATTGGCAATTTGAGCACCTTTCCTGGTCATTGGTGTATCACAAAAAAGCAGTTCCGACAGAAGCCTAGACTCAGCCTTCTATGGTGA 1440 0.4396 MSMLLRKAWEMVLWRSDSSTSASASSSTITTITTFSPEVARSDIGELEQLPSDILMQILKLLGPKAVARLSVVCKSLRYIVSDNRLWIYFLQTHQAEPSGDSVFFAETTLSSGYPLPAYTGHWPQLSFKHIYGQRAQVPGSIIIDGGSGYCKFGWSKYESPSGRSATFLEFGNIESPMYTRLRHFFATIYNRMQVKPNKQPVIVSVPICHYEDTHSAKASRRQLKEAIYASLFDMNVPAVCAVNQATLALYAAKRTSGIVVNIGFQVTSIVPILNGKVLRKVGVEVVGLGALKLTGFLREKMQLNNLTFQSLYTVRSLKEKLCYVALDYEAELAKDTKASYEAAGEGWFTLSKERFQTAEILFQPHFAGVQAMGLHQAIALCVEHCHSADLPGDSDWYKTIVLSGGTACLPGLAERVEKELHALLPPYMFKGIRVIPPPYGADTPWFGAKIIGNLSTFPGHWCITKKQFRQKPRLSLLW* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01643 479 SUPERFAMILY Actin-like ATPase domain 255 470 IPR043129 -
Lapu5g01643 479 Pfam F-box domain 48 88 IPR001810 GO:0005515
Lapu5g01643 479 Pfam Actin 188 469 IPR004000 -
Lapu5g01643 479 Gene3D Actin; Chain A, domain 4 289 372 - -
Lapu5g01643 479 SUPERFAMILY F-box domain 41 98 IPR036047 GO:0005515
Lapu5g01643 479 Gene3D - 34 136 - -
Lapu5g01643 479 PANTHER ACTIN 183 471 IPR004000 -
Lapu5g01643 479 Gene3D - 246 444 - -
Lapu5g01643 479 SUPERFAMILY Actin-like ATPase domain 141 261 IPR043129 -
Lapu5g01643 479 Gene3D - 184 471 - -
Lapu5g01643 479 SMART fbox_2 50 90 IPR001810 GO:0005515
Lapu5g01643 479 CDD NBD_sugar-kinase_HSP70_actin 142 286 - -
Lapu5g01643 479 ProSiteProfiles F-box domain profile. 44 90 IPR001810 GO:0005515
Lapu5g01643 479 SMART actin_3 139 469 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01643 Lapu-Chr5 29494644 29502675 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01643 188 471 Cytoskeleton Gene Families AT3G12110 34.589 4.94e-45 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01643 K16616 - gmx:100791973 850.892