Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01639 ATGAATTTGACAAATAAGTCAAGCCCAGATGGTTCCACCAATGGGTTTCAGTCCCAGCTTCAGCAACAACAACAACACAGTAATGGGTGGGAGGGATCATCTACACACCCACCCACTAAGCCTTATCCTGCACCGACGGCTAGCTATCAGGACATTGTTCGTGATGAAAACCTCTTCTGGGAAAAGCTTCAAGCTTTTCACCAATCACTTGGCACCAAATTTAAAAAAGTAATGGAATTAAAATTGATGTTACTTTTCCCTTTTTGCTTGTGTAGGGTTGCTATTGTGGGAGGAAAGTCACTTGATTTACATCGCCTTTTTGTGGAAGTTACATCTCGTGGTGGGATTGAAAAGGTGATTGTTGATCGGAAGTGGAAGGAAGTGATTCTGACCTTCAATTTCAAAGATACCATAACTAGTGCATCATTTGTGGTGCGCAAATCCTATTTATCGATGCTTTATCACTTTGAGCAAGTGTATTATTTTGGGAGGCAAGGCTTTCCTCCCCAAACACCTGATATTATGATTAGAGGCCAACCAGGCCTTCCCAATAGCTCCACAACCATTCTGGAGGTTGCTGCTGTGAATGACTCACCTGTTCAGGGTACTTCAGTGCGGGGATATGATGCTGTGCTTTCTGGAACAATTGATATGAAATTTGATGGTGGATATATAGTCACAGTGACTATGGGTTCTGAGGAGCTGAAAGGTGTCCTATTTCATGTTCCTGATAACTTGAGTTCTCATACCGAAGGCATGCCTAGTTCACAGAATCACAGTGAAGGCAGGTCTGGTTCACAGAGTCGAAAGAGAGCAAAATATACCCCACGTGATCCATTCCGGCCGAAGTCAAACAGGAGCGGTTACAACTTTTTCTTTGCTGAGAATTATGCCATGCTGAAGCCCTCTTATCACGGGCAAGAGAGAGCAATTAGTAAGAGGATTGGATTTCTGTGGAACAATCTGTCAGAAGCAGAAAGACAGGTTTATCAAGAAAAAGGGGTGAAAGATAAGGAAAGATACAGAACCGAACTGATGGAGTACAAATCCAACAATTCAACTCCAAATGCTCAATAA 1077 0.4271 MNLTNKSSPDGSTNGFQSQLQQQQQHSNGWEGSSTHPPTKPYPAPTASYQDIVRDENLFWEKLQAFHQSLGTKFKKVMELKLMLLFPFCLCRVAIVGGKSLDLHRLFVEVTSRGGIEKVIVDRKWKEVILTFNFKDTITSASFVVRKSYLSMLYHFEQVYYFGRQGFPPQTPDIMIRGQPGLPNSSTTILEVAAVNDSPVQGTSVRGYDAVLSGTIDMKFDGGYIVTVTMGSEELKGVLFHVPDNLSSHTEGMPSSQNHSEGRSGSQSRKRAKYTPRDPFRPKSNRSGYNFFFAENYAMLKPSYHGQERAISKRIGFLWNNLSEAERQVYQEKGVKDKERYRTELMEYKSNNSTPNAQ* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01639 358 MobiDBLite consensus disorder prediction 248 263 - -
Lapu5g01639 358 CDD ARID_HMGB9-like 55 157 IPR045303 GO:0003677
Lapu5g01639 358 MobiDBLite consensus disorder prediction 1 47 - -
Lapu5g01639 358 SMART hmgende2 281 350 IPR009071 -
Lapu5g01639 358 Gene3D High mobility group box domain 265 357 IPR036910 -
Lapu5g01639 358 CDD HMG-box_AtHMGB9-like 282 348 - -
Lapu5g01639 358 SMART bright_3 54 162 IPR001606 GO:0003677
Lapu5g01639 358 MobiDBLite consensus disorder prediction 246 285 - -
Lapu5g01639 358 Pfam ARID/BRIGHT DNA binding domain 57 157 IPR001606 GO:0003677
Lapu5g01639 358 SMART ARID_2 50 157 - -
Lapu5g01639 358 Gene3D - 44 168 IPR036431 GO:0003677
Lapu5g01639 358 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 282 349 IPR009071 -
Lapu5g01639 358 MobiDBLite consensus disorder prediction 264 280 - -
Lapu5g01639 358 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 23 355 - -
Lapu5g01639 358 Pfam HMG (high mobility group) box 282 349 IPR009071 -
Lapu5g01639 358 ProSiteProfiles ARID domain profile. 53 161 IPR001606 GO:0003677
Lapu5g01639 358 SUPERFAMILY ARID-like 50 171 IPR036431 GO:0003677
Lapu5g01639 358 MobiDBLite consensus disorder prediction 1 35 - -
Lapu5g01639 358 SUPERFAMILY HMG-box 281 352 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01639 Lapu-Chr5 29470245 29474592 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01639 47 354 ARID Transcription Factor Family AT3G13350 49.677 3.43e-92 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lapu5g01639 ARID 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01639 - - gmx:100793029 558.14