LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu5g01628	ATGGCTGGGATTGATGACAATGCTGCTCTTACTGGCGATTGGGGTCTTGCTAGCCCAAGTCCAAGAACATTTTTCTCTAGAATGTTAGAGGAAGATAATGTAACAAGATCAATCTCAGAACATTCTGGAAGTGGTAGAACTGGGGAGTTCTTTTCAGGACCTCATGAGCCTAGTGAGACAGGGAAGGGAAACATGAAGGATGGGGCACAAGATGGTGATTCTGGAGCCCAATTGACCGACCTGAGTTTTCAGGCCGAGCTGAAGTCGAACTCCCGTGGAGGTCTTGTGGAAAGAATGGCTGCTAGAGCTGGGTTTAATGCTCCTAGGTTGAACACTGAAAGCATTAGATCTACTGACCTTTCACTCAATTCTGACATTCAGTCTCCTTACTTGACCATCCCGCCAGGTCTCAGTCCTACTACACTTTTAGATTCTCCAGTGTTCCTTGCAAATTCACTGGCACAGCCTTCACCAACAACTGGAAAGTTTCTATTCATGTCAAATAGCAACATGCGGCACTCAGAATTATCATCCGATGCTCCAGAAAAATGTAAAGATAATGGCTTCGATGATATCTATACATCATCCTTTGCTTTCAAGCCTGCAACAGACTCAGGCTCTTCTTTCTATCATGGTGCTGGAAGAAAAATAAATCCAACTACACTTCATCAACAATCTCGTCCTGGTATTGAGGTTTCGGCTCAGTCAGAAAATTCTTTTCATTCCCAAAGTGTTGATGCTGTCAAAGTTCAAACTGAGAACAAAAGTGGTCTTCATCTTCAGGCAGACTTTGTCGAATCACCTCCTGAAAAAGATATTAAAATGTTTTGTGCCGATCAAAGGGCTTTTGATACTGTTGGTGGTGGCATTGAACATTCTGCACCAGTTGAAGAGCCTGGAGATGAAGAAGATCAGAGAGGCAATGGAGATTCAATGACTGGTGGTGTTGGGGGTGCACCATCTGATGACGGATATAACTGGAGAAAATATGGCCAAAAGCAAGTTAAAGGCAGCGAGTACCCTCGAAGTTACTACAAGTGCACACATCCAAACTGTCAGGTTAAGAAGAAAGTAGAACGATCCCATGAGGGCCATATAACTGAGATCATCTATAAGGGAACGCACAACCATCCAAAACCTCCTCCAAATCGCCGATCAGGTATAGGTTCAGTTAACCCTCATACTACTGACATGCAAGTGGACAACCCTGAACATGTTGAATCACACAATGGTGGTGATGGCGACATGGGCTGGAGTAATGTACAAAAGGGAAATATAGCTGGAAACTGGAAGCACGAAAACCTTGAAACAACATCATCAGCATCTGTTGGCCCTGAATACTGTAACCAGTCCACCAATTTGCTGACTCAAAATGGTACTCAAATTGATTCAGGAGAGGCAGTTGATGCCTCGTCTACCTTTTCTAATGAAGAAGATGAAGACGATCAAGGCACTCATGGTAGTGTGTCATTAGGTTATGACGGGGAAGGAGATGAATCAGAGTCCAAGAGAAGGAAACTGGAATCATATGCAGACCTGAGTGGAGCTACTAGAGCCATTCGTGAGCCTAGAGTTGTTGTACAGACTACAAGTGAAGTAGATATCCTCGATGATGGTTATCGATGGAGGAAATATGGACAGAAAGTTGTCAAAGGAAATCCCAACCCAAGGAGTTACTACAAGTGCACGAATGCAGGCTGCACAGTAAGGAAACACGTGGAGAGAGCATCACACGACCTTAAGTCCGTGATTACTACCTATGAGGGAAAGCACAACCATGATGTTCCTGCTGCTCGTGCCAGCAGCCATGTCAACGCTAATGCCTCCAACACCGGCCAAGCTTCTGGTGTTCTTCAGTCCCATGTTCACAGACTTGAACCATCTCAAGTACACAATGGCGTTGGAAGGCTCGAGAGGCCGTCCCTCGGTTCGTTCAACCTACCCGGAAGGCAGCAGCTAGGACCTTCCCATGGCTTCTCCTTTGGCATGAACCAACACATGCTATCGAATCTGGCAATGTCAGGGTTAGGTCACATGCAAGCAAAGCTCCCTGTCATGCCAGTTCATCCATTCTTGGCACAACAACAACAACAACGCACTTCAAATGATTTCGGTTTCATGATGCCAAAGGGAGAACCAAATGTGGAGGCTATTCCTGAACGTGGTGGTGGCCTTAACCTGCCAAATGGTTCATCAGTGTACCAAGAAATCATGAGTCGCATGCCCCTTGGACCTCATATGTAA	2244	0.4545	MAGIDDNAALTGDWGLASPSPRTFFSRMLEEDNVTRSISEHSGSGRTGEFFSGPHEPSETGKGNMKDGAQDGDSGAQLTDLSFQAELKSNSRGGLVERMAARAGFNAPRLNTESIRSTDLSLNSDIQSPYLTIPPGLSPTTLLDSPVFLANSLAQPSPTTGKFLFMSNSNMRHSELSSDAPEKCKDNGFDDIYTSSFAFKPATDSGSSFYHGAGRKINPTTLHQQSRPGIEVSAQSENSFHSQSVDAVKVQTENKSGLHLQADFVESPPEKDIKMFCADQRAFDTVGGGIEHSAPVEEPGDEEDQRGNGDSMTGGVGGAPSDDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGTHNHPKPPPNRRSGIGSVNPHTTDMQVDNPEHVESHNGGDGDMGWSNVQKGNIAGNWKHENLETTSSASVGPEYCNQSTNLLTQNGTQIDSGEAVDASSTFSNEEDEDDQGTHGSVSLGYDGEGDESESKRRKLESYADLSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARASSHVNANASNTGQASGVLQSHVHRLEPSQVHNGVGRLERPSLGSFNLPGRQQLGPSHGFSFGMNQHMLSNLAMSGLGHMQAKLPVMPVHPFLAQQQQQRTSNDFGFMMPKGEPNVEAIPERGGGLNLPNGSSVYQEIMSRMPLGPHM*	748

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu5g01628	747	MobiDBLite	consensus disorder prediction	629	651	-	-
	Lapu5g01628	747	MobiDBLite	consensus disorder prediction	288	328	-	-
	Lapu5g01628	747	ProSiteProfiles	WRKY domain profile.	531	596	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lapu5g01628	747	SUPERFAMILY	WRKY DNA-binding domain	320	380	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lapu5g01628	747	SMART	WRKY_cls	321	379	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lapu5g01628	747	SMART	WRKY_cls	536	595	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lapu5g01628	747	SUPERFAMILY	WRKY DNA-binding domain	528	596	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lapu5g01628	747	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	143	613	IPR044810	GO:0003700
	Lapu5g01628	747	MobiDBLite	consensus disorder prediction	1	21	-	-
	Lapu5g01628	747	MobiDBLite	consensus disorder prediction	370	424	-	-
	Lapu5g01628	747	Gene3D	WRKY domain	523	589	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lapu5g01628	747	Pfam	WRKY DNA -binding domain	322	378	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lapu5g01628	747	Pfam	WRKY DNA -binding domain	537	593	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lapu5g01628	747	FunFam	WRKY transcription factor 33	523	589	-	-
	Lapu5g01628	747	Gene3D	WRKY domain	316	381	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lapu5g01628	747	MobiDBLite	consensus disorder prediction	464	507	-	-
	Lapu5g01628	747	ProSiteProfiles	WRKY domain profile.	322	380	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lapu5g01628	747	MobiDBLite	consensus disorder prediction	34	76	-	-
	Lapu5g01628	747	FunFam	WRKY transcription factor	312	381	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu5g01628	Lapu-Chr5	29391016	29396380	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu5g01628	1	742	WRKY Transcription Factor Family	AT5G56270	49.098	0.0	563

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Lapu5g01628		WRKY	3.8e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu5g01628	K18835		-	gmx:100796545	1325.84