Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01612 ATGGCAAACTTTTGGGTTCTCCTTCTCCTTCTCCTCTGCACCCTCCAGAGTTGCCTCGGTGTCTCCAACCCCACCAACTTCATCAAGTCCTCCTGCAGCGCCACCCAGTACCCCGCCCTCTGCGTTGAGTCGCTGTCCGTCTACGCCGCCGCCATCCAGCAGGACCCCCACCAGCTGGTTCAGACCGCCCTCTCCCTCGCCCTCAACAGAACCGAGTCCACCAAAAGCTTCGTGGCCAAGTGCAACAAGTTCAGGGGTCTGAAGCCACGAGAATACGCCGCCCTCAAGGACTGCGCCGAGGAAATCAGCGACGGCGTGGACCGCCTCTCCCGCTCCCTCAAGGAGCTCAAGCTCTGCAAGCTCAATGGGCAGGACTTCGCCTGGCACATAAGCAACGTCGAGACTTGGGTCAGCTCTGCGCTCACCGACGAGAGCACGTGCGGCGACGGCTTCGCCGGAAAGGCGCTCAGCGGCAAGATCAAAGACGCCATCAGGGGCAGAATGGTCAATGTTGCTCAGGTCACCAGCAATGCCCTCTCTCTCATCAACCAGTATGCTGCCAAGCACTAG 570 0.6035 MANFWVLLLLLLCTLQSCLGVSNPTNFIKSSCSATQYPALCVESLSVYAAAIQQDPHQLVQTALSLALNRTESTKSFVAKCNKFRGLKPREYAALKDCAEEISDGVDRLSRSLKELKLCKLNGQDFAWHISNVETWVSSALTDESTCGDGFAGKALSGKIKDAIRGRMVNVAQVTSNALSLINQYAAKH* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01612 189 NCBIfam pectinesterase inhibitor domain 7 185 IPR006501 GO:0004857
Lapu5g01612 189 Pfam Plant invertase/pectin methylesterase inhibitor 26 181 IPR006501 GO:0004857
Lapu5g01612 189 SMART PMEI_2 23 181 IPR006501 GO:0004857
Lapu5g01612 189 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 26 185 IPR035513 -
Lapu5g01612 189 PANTHER PECTINESTERASE INHIBITOR-LIKE 7 181 - -
Lapu5g01612 189 FunFam Pectin methylesterase inhibitor 1 23 185 - -
Lapu5g01612 189 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 185 IPR035513 -
Lapu5g01612 189 CDD PMEI-like_3 30 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01612 Lapu-Chr5 29236884 29238566 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01612 28 182 Carbohydrate Esterase AT3G14310 30.128 5.23e-20 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01612 - - gmx:100305900 308.145