Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01610 ATGGAAACCCTTACTGCAAAAGTATGCTTCACACTTGTGTTGATATCTTCAATCTTCTCACTAGCCTCATCAAGAAGAGGACCAGCTTCATCCAGCAACATAGATTGGTGGTGCAACCTAACCCCGCACCCTGTGTCATGCAAATACTACATCACCACTGATCAAACGAAGAGCCACCATTTCACATTGATCAAGCACAGAACTGTCTTCCGGGGAATGCTTGTTGAACATGCCCTAAACCAAGCTCTCATCATGCAGAAAGAAGCACATGACTCTGACCAAACCAGCATGCCAACAAAGAACCACAGAACCGTTCATGGTGACTGCTTGAAGCTCTATGGGAAAACCATCTTCCACCTCAACCGCACCCTTGAGTGCTTCCACGGGAAGCAAAAATGTTCATCGGTTGATGCACAGACATGGCTCAGCACTGCCCTCACAAACATTCAAACGTGTCAAGATGGAACAATTGAGTTAGGAATTGAGGATTTCAAGGCTCCCAACAACAACAACAACGTCACTGAGATGATAAGGAACAGCTTGGCCATCAACATGGACTTCATGAAACATGATCATCACACGGAAACAGCTCATGAAGATGCGTTTCCAAGTTGGTTTTCAAGGCCAGAGAGGAAACTGTTGCAGTCTACAACGATAAAGGCTCATGTGGTGGTGGCAAAAGATGGTTCGGGGAATTTCAGAACTGTGCAAGATGCTCTCAATGCTGCGGCAAAGAGGAGGGTGAAGACTAGGTTTGTGATACATGTGAAGAAAGGGGTTTATAAGGAGAATATTGAGGTTGCTGTGCACAATGATAACATTATGCTGGTTGGTGACGGAATTAGAAACACTGTAATCACGAGTAGCAGAAGTGTTCAACAAGGTTACACCACTTACAGCTCTGCAACTGCTGGCATTGATGGTCTCCACTTCATTGCAAGGGACATCACCTTCCAAAACACAGCCGGAGCTCAAAAGGGTCAAGCGGTGGCGCTCCGGTCGGCCTCCGATCTCTCCGTCTTCTACCGGTGTGCCATCATGGGCTACCAAGACACACTCATGGCCCATGCACAGCGCCAATTTTACAGACAATGCTACATCTATGGCACCATTGACTTCATATTTGGCAACGCTGCAGTAGTCTTCCAAAATTGTTACATTTACGCTAGAAAACCCTTAGAGGGCCAAGCCAACATGATCACGGCCCAAGGCCGAGGGGACCCATTTCAAAACACTGGAATTTCCATCCACAATTCTCAAATTCGGGCCGCCCCAGACCTCAGGCCCGTGATGGACAAATACAACACCTTTTTGGGTAGGCCTTGGCAACAATACTCAAGAGTTGTGGTCATGAAAACTTTCATGGACACCTTGGTTAGCCCATTGGGCTGGTCCCCTTGGGGTGATTCTAATTTTGCTCAAGACACACTTTATTATGGGGAGTATCAAAATTATGGGCCTGGTGCATCTACAAGTAACAGAGTGAAATGGCCCGGGTTTCATGTGATTACAAGCCCAACTGAAGCGTCTCAATTTACAGTCACACGCCTCCTTGCAGGCCCAACCTGGTTGGGTTCTACAACTGTGCCATTTACCTCTGGGCTTTGA 1608 0.4708 METLTAKVCFTLVLISSIFSLASSRRGPASSSNIDWWCNLTPHPVSCKYYITTDQTKSHHFTLIKHRTVFRGMLVEHALNQALIMQKEAHDSDQTSMPTKNHRTVHGDCLKLYGKTIFHLNRTLECFHGKQKCSSVDAQTWLSTALTNIQTCQDGTIELGIEDFKAPNNNNNVTEMIRNSLAINMDFMKHDHHTETAHEDAFPSWFSRPERKLLQSTTIKAHVVVAKDGSGNFRTVQDALNAAAKRRVKTRFVIHVKKGVYKENIEVAVHNDNIMLVGDGIRNTVITSSRSVQQGYTTYSSATAGIDGLHFIARDITFQNTAGAQKGQAVALRSASDLSVFYRCAIMGYQDTLMAHAQRQFYRQCYIYGTIDFIFGNAAVVFQNCYIYARKPLEGQANMITAQGRGDPFQNTGISIHNSQIRAAPDLRPVMDKYNTFLGRPWQQYSRVVVMKTFMDTLVSPLGWSPWGDSNFAQDTLYYGEYQNYGPGASTSNRVKWPGFHVITSPTEASQFTVTRLLAGPTWLGSTTVPFTSGL* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01610 535 Pfam Pectinesterase 222 520 IPR000070 GO:0030599|GO:0042545
Lapu5g01610 535 CDD PMEI-like_3 36 189 - -
Lapu5g01610 535 ProSitePatterns Pectinesterase signature 2. 367 376 IPR033131 -
Lapu5g01610 535 PANTHER PECTINESTERASE 16 525 - -
Lapu5g01610 535 SUPERFAMILY Pectin lyase-like 217 534 IPR011050 -
Lapu5g01610 535 Gene3D - 216 535 IPR012334 -
Lapu5g01610 535 NCBIfam pectinesterase inhibitor domain 6 184 IPR006501 GO:0004857
Lapu5g01610 535 SMART PMEI_2 29 183 IPR006501 GO:0004857
Lapu5g01610 535 Pfam Plant invertase/pectin methylesterase inhibitor 33 183 IPR006501 GO:0004857
Lapu5g01610 535 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 184 IPR035513 -
Lapu5g01610 535 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 187 IPR035513 -
Lapu5g01610 535 FunFam Pectinesterase 216 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01610 Lapu-Chr5 29220462 29222409 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01610 31 535 Carbohydrate Esterase AT3G47400 56.589 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01610 K01051 - gmx:100806133 948.732