Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01608 ATGAATAATTTTTCCCATGTTCCTCCCGGTTTTAGGTTCCACCCCACTGATGAAGAACTTGTTGACTACTACCTGAGGAAGAAAGTTACCTCAAGAAGGATTGACTTAGATGTCATAAAAGATGTGGACCTCTATAAAATTGAGCCGTGGGATCTTCAAGAGCTTTGCAGAATAGGAACAGAAGAGCAAAATGAATGGTACTTTTTTAGCCATAAAGATAAGAAGTATCCAACTGGAACTCGCACAAATAGAGCAACAGCAGCAGGGTTTTGGAAAGCAACTGGAAGAGACAAAGCAATCTATTCAAAGCATGATTTGATAGGAATGAGGAAAACCTTAGTTTTCTATAAAGGTCGAGCCCCCAATGGACAAAAATCAGATTGGATCATGCACGAGTATCGACTTGAAACAGATGAAAATGGCACACCACAGGCAAAAGGATGGGTTGTGTGTAGAGTATTCAAAAAGAGATTAACAACCATGCGTAAACTGAGTGAGCATGATTCTCCCTGTTGGTATGATGAGCAAGTCTCTTTCATGCAAGACATGGATTCACCAAAGCAAAGCTCTCAACCTAATAATTTGCCCTACCAGTTTCCATATCCATGCAAGAAAGAGCTGGATTTGTCATACCATTTGCCTCTCCAGCTTCCATTGGAGAATCAAAAAGTGCTTCAATCTGCCTCCAACTCAATGACACCATACGGTGTGGAAGAAAACCATGTCATGCAGCCAGTATCAATCATGCAGCAAGTTCAGCACTCTGGTCAACAAAATTTTCAGGCAGTGTTTGGAAACAATGCCAATGAACAAGTGGCTGATTGGAGAGCTCTTGACAAGTATGTTGCTTCACAGCTTAGTCAGGAAGATGCAGTCAAAGAGAATAGTTACTCAAACACAGCCAACAACATCTTTCATGTGAAGAACAATAGCAATATTGAACAGTTGAGAGACTTGGACAAGGAGGAAATGATGATGCCTGAAAATGCCTCAACTTCAAACTCAAGCTGTCCAATTGACATGTGGAAATAG 1032 0.4089 MNNFSHVPPGFRFHPTDEELVDYYLRKKVTSRRIDLDVIKDVDLYKIEPWDLQELCRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQAKGWVVCRVFKKRLTTMRKLSEHDSPCWYDEQVSFMQDMDSPKQSSQPNNLPYQFPYPCKKELDLSYHLPLQLPLENQKVLQSASNSMTPYGVEENHVMQPVSIMQQVQHSGQQNFQAVFGNNANEQVADWRALDKYVASQLSQEDAVKENSYSNTANNIFHVKNNSNIEQLRDLDKEEMMMPENASTSNSSCPIDMWK* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01608 343 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Lapu5g01608 343 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 284 - -
Lapu5g01608 343 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Lapu5g01608 343 FunFam NAC domain-containing protein 16 160 - -
Lapu5g01608 343 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Lapu5g01608 343 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01608 Lapu-Chr5 29209017 29213746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01608 1 343 NAC Transcription Factor Family AT1G12260 56.338 4.49e-134 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu5g01608 NAM 4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01608 - - gmx:100775867 605.52