Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01589 ATGGCTTTGAGGGTTATAGCAGTTTCGGCGTTTTCTACATTTTTAAGCTTTGTGGGTCTTCGGTTTTGCACAGACTTGTCTTTGGATAAACTTAGATCAGATGGACTAATAGGCTGGAATTTAATACAATTGGACGATGCCAGCGAAGACTTTGAGTTGCCTTCGGGTTTGTTCACCACAATAGGGCTACTGCTGAATTGCATGATCAATTTATTTGTCCTTCTCAATCTTTGTATCAAGGCTGTGTTTTTCTCGGAGTTATATGCTTCTGAAACTCGTAAACTGACTGAGCGTCTTGTTAATTATGTCATTTACAAGGGGACATTTCTGCCACTGATTGTGCCACCAACAATTTATCAAGCTGGTCTTTGGTCAACTTGGTTGACTGTGCTTTGCTCTCTGAAGATGTTTCAAGCTTTAGCTAGAGATCGTTTGGAACGGCTGAATGCATCTCCGTCTGCTACACCCTGGACGTATCTCCGTGTATATTCAGCATTATTATTTGTTTTCATGGCTGATGTTCTCTGGATAAGGCTTTGTCTGACAATATATAGAACACATGGGTCCTCTATGTATCTGCTATTATTCTTTGAGCCCTTCAGTATTGCTTTTGAGACCCTGCAGGCTATTTTGGTACATGGATTTCAGTTGCTTGACATATGGCTGCATCATTCAGCTTGCCATAGCAGTGATTTCCGAACACCTAAACTGCTCGACACATTAACTGCAGGTTCATTGTTGGAATGGAAGGGAATTCTTATTCGGAACTTGGGGTTTTTCCTAGACATGTCTACATTTTTTATGGCGCTTGGCCATTACTTGTATATATGGAGGCTTCATGGCATGGCTTTCCATCTTGTAGATGCAGTGCTATTTCTAAATATACGTGCATTGCTTAGTGCAATAGTAAATCGTGTAAAAGGCTTTATCAAGCTAAGGATAGCTCTAGGAACACTTCATGCTGCTCTTCCTGATGCAACAACTGAGGAGCTAAGAGCGTATGATGATGAATGTGCTATTTGTAGAGAACCGATGGCTAAGGCTAAAAAGCTAAACTGCAATCATCTCTTCCATCTTGCATGCTTGAGATCTTGGTTGGATCAAGGCCTGACTGAGATGTATACTTGCCCAACTTGTCGAAAGCCACTTTTTGAGGGTGTGCCTGAAAATGAAGCAAGCTCTGACACGGGAACTATATCTAGTGATGAACAGCTTGCACGCCAAATTAGTGCTGGATTGGATCGGCCAAACTCTGCTAGACATACAATGCCTACCGGATTGTTTCCAAATCAGACACTAAACACTCCTGAAGAGGCTGGTGAGACCCAGGGAAAGAAAAAGAATTTCAAGATGGCAATTCTGATGTTGTCTGGTCACCTCTCAACGTGGGGTGCAGGGCTGGACTCAGGTTGGTTGCATTCTTGGCCAAATCAAGGTGTTGATGGGGCCGGTCCTTCTACTGCTATCAGAACAGTTGGATTGGGAAGAGTTCAAATGATGATGAGGCATCTTGCATCTGTTGGAGAAACCTATGCTCAGACTGCCTTTGAAGATTCTTCTTGGAACCTTTGGCCCATTAATTCCTCTCAGGCTTCTGCAAGTGCTTCAACCATTCCTCCCCCTAGTGGAAGACCGCCAGGACGAAATGGTAGTTTACATTTAAGGACAGCTTCACAGCCTTCAAATGATAATGTCGCTAATATACTTGCCATGGCTGAGACTGTTCGGGAGGTTCTACCTCATATTCCAGATGACATGATATTCCAGGACTTGCAAAGAACAAATTCAGTTATGGTTACTGTGAATAATCTTCTCCAAATGTGA 1824 0.4282 MALRVIAVSAFSTFLSFVGLRFCTDLSLDKLRSDGLIGWNLIQLDDASEDFELPSGLFTTIGLLLNCMINLFVLLNLCIKAVFFSELYASETRKLTERLVNYVIYKGTFLPLIVPPTIYQAGLWSTWLTVLCSLKMFQALARDRLERLNASPSATPWTYLRVYSALLFVFMADVLWIRLCLTIYRTHGSSMYLLLFFEPFSIAFETLQAILVHGFQLLDIWLHHSACHSSDFRTPKLLDTLTAGSLLEWKGILIRNLGFFLDMSTFFMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLSAIVNRVKGFIKLRIALGTLHAALPDATTEELRAYDDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFEGVPENEASSDTGTISSDEQLARQISAGLDRPNSARHTMPTGLFPNQTLNTPEEAGETQGKKKNFKMAILMLSGHLSTWGAGLDSGWLHSWPNQGVDGAGPSTAIRTVGLGRVQMMMRHLASVGETYAQTAFEDSSWNLWPINSSQASASASTIPPPSGRPPGRNGSLHLRTASQPSNDNVANILAMAETVREVLPHIPDDMIFQDLQRTNSVMVTVNNLLQM* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01589 607 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 386 IPR013083 -
Lapu5g01589 607 MobiDBLite consensus disorder prediction 423 439 - -
Lapu5g01589 607 CDD CUE_RIN3_plant 568 605 IPR035667 -
Lapu5g01589 607 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 5 607 - -
Lapu5g01589 607 MobiDBLite consensus disorder prediction 532 559 - -
Lapu5g01589 607 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Lapu5g01589 607 FunFam E3 ubiquitin protein ligase RIN2 311 390 - -
Lapu5g01589 607 ProSiteProfiles CUE domain profile. 567 607 IPR003892 GO:0043130
Lapu5g01589 607 SMART ring_2 338 379 IPR001841 -
Lapu5g01589 607 Gene3D - 566 606 - -
Lapu5g01589 607 SUPERFAMILY RING/U-box 325 386 - -
Lapu5g01589 607 FunFam E3 ubiquitin protein ligase RIN2 566 606 - -
Lapu5g01589 607 MobiDBLite consensus disorder prediction 415 444 - -
Lapu5g01589 607 Pfam CUE domain 571 607 IPR003892 GO:0043130
Lapu5g01589 607 Pfam Ring finger domain 336 380 IPR001841 -
Lapu5g01589 607 CDD RING-H2_AMFR 336 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01589 Lapu-Chr5 29054199 29063551 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01589 69 421 C3H Transcription Factor Family AT3G16090 27.749 2.74e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01589 K10636 - gmx:100820578 1045.03