Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01580 ATGGCCGCCGAGAAGAAACTCTCGAACCCGATGCGAGAAATCAAAGTGCAGAAACTCGTCCTCAACATCTCCGTCGGCGAGAGCGGCGATCGTCTCACTCGCGCTGCCAAGGTCCTCGAACAACTCAGTGGCCAAACCCCTGTTTTCTCCAAAGCAAGGTACACTGTGCGTTCCTTTGGGATTAGAAGAAACGAGAAGATCGCGTGCTATGTGACTGTGAGAGGTGACAAGGCGATGCAGCTTTTGGAAAGTGGTTTGAAGGTGAAGGAGTACGAGCTGCTGAGGAGAAATTTCAGCGACACTGGCTGCTTCGGCTTCGGCATTCAGGAGCACATTGATTTGGGCATCAAGTATGATCCTTCAACTGGTATTTATGGAATGGATTTCTTTGTTGTTCTGGAGCGCCCTGGGTATCGCGTGGGACGACGTCGTCGTTGCAAGTCTCGTGTTGGAATCCAGCACCGTGTGACGAAGGAGGATGCCATGAAGTGGTTCCAAGTTAAATATGAAGGTGTCATCCTAAACAAGTCTCAGGCAATTTAG 543 0.5046 MAAEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQAI* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01580 180 Pfam Ribosomal protein L5 9 62 IPR031310 -
Lapu5g01580 180 SUPERFAMILY RL5-like 8 173 IPR022803 -
Lapu5g01580 180 ProSitePatterns Ribosomal protein L5 signature. 39 55 IPR020929 GO:0003735|GO:0005840|GO:0006412
Lapu5g01580 180 Gene3D - 2 177 IPR022803 -
Lapu5g01580 180 FunFam 60S ribosomal protein L11 2 174 - -
Lapu5g01580 180 Pfam ribosomal L5P family C-terminus 66 164 IPR031309 -
Lapu5g01580 180 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 1 172 IPR002132 GO:0003735|GO:0005840|GO:0006412
Lapu5g01580 180 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 3 176 IPR002132 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01580 Lapu-Chr5 28984127 28986946 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01580 1 180 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 95.000 9.51e-129 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01580 K02868 - gmx:100819731 339.732