Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01575 AGACACAAAGCCACAAACTTGTTTTCCAACCCCACATTGAACCTGAAAAAGACAATGTCACCCTCACCATTGTTCTTCCTTCTCTTTCTCTGCTTCCTCTTAGCTCCATCACTCTTAGCTCAATCTCCACCTTCTCCACCATCTCCTCCTTCTCCTTCTTCTTCTGTTGCTTGCAAAGGCACACTGTATCCAAAACTATGCCGTTCCATTCTCTCAGCCATTCGTTTCTCCCCTTCTGACCCTTATGGCTATGGCAAGTTCTCCATAAAGCAAAGCCTCAAACAGGCACGTAAACTGGCCAAGGTGTTTGAAGACTTTCTCAAACGCCACCAATCATCACCATCATCTTCCCTTAACCATGCAGAAGTTGCATCCCTAGGAGACTGCAAAGACCTCAACCAGCTCAACGTGGACTACTTGTCGTCCATATCTGAGGAGCTCAAGTCTGCAGGCTCCTCAAACTCTGAGCTGGTTGAGAAAATTGAGAGCTATCTCAGTGCTGTGGCCACCAACCATTACACATGCTATGATGGTTTGGTGGTGACCAAAAGCAACATTGCCAATGCACTTGCTGTGCCTCTCAAGGATGTGACCCAGTTGTACAGTGTCTCACTTGGGTTGGTCACTGAGGCTCTTGACAAGAACCTCAGAAGAAACAAAACTCGCAAACATGGACTCCCCAACAAGACCTTCAAGGTTAGACAACCACTCGAGAAGCTCATCAAGTTTCTTCGTACAAAGTATACTTGCACCAAGTTATCCAATTGCACCAGAACTGGAAGGAATCTTAAAGAAAGTGGAAGCAAAGGAATTTTATTATACGATTATGTGTTTGTGAGTTCTTATGGAATAGACAACTACACTTCCATTGGAGAGGCTATTGCTGCTGCACCCAACAACACAAAGCCTGAAGATGGATATTTTCTTGTGTATGTTAGGGAGGGAATCTATGAGGAATATGTAGTAATTCCCAAAGAAAAGAAGAATATATTGCTTGTTGGAGATGGTATTAACAAAACTATCATCACGGGGAACCATAGTTTCGTAGATGGTTGGACAACTTTCAATTCTTCCACATTTGCTGTTTCCGGAGAAAGGTTTATAGCAGTGGATGTTACATTCAGAAACACAGCTGGACCTGAAAAACACCAAGCAGTGGCAGTGAGGAACAATGCTGACCTCTCTACTTTCTACCGTTGCAGTTTTGAAGGATATCAAGACACTCTCTATGTTCACTCTTTGAGGCAATTCTACAGGGAATGTGAAATCTATGGCACTGTGGACTTCATTTTCGGCAATGCAGCCGTGGTCTTCCAAGACAGTAAGATCTATGCCAGAAAACCATTGCCAAACCAGAAGAATGCTGTGACAGCACAAGGAAGAACTGATCCTAATCAAGATACTGGCATTTCAATCCAAAACTGCACTATTGATGCTGCACCAGACTTAGCTGCGGACTTGAATTCGACAGCAAGTTACTTAGGCCGGCCATGGAAGTTGTATTCAAGAACTGTCTACTTGCAGTCATATATTGGAAATGTTATTCAACCTGCAGGGTGGTTAGAGTGGAATGGCACAGTTGGGTTAGACACCCTCTTTTATGGTGAGTTTAACAACTATGGACCAGGATCTAACACTAGCAGTAGAGTACAATGGCCTGGTTACTTTCTGTTGAATGCTACTCAAGCTTGGAACTTCACAGTCCTGAACTTTACGTTGGGAAATACCTGGCTTCCTGACACAGATATACCTTACACTGAAGGACTACTAAGATAG 1776 0.4364 RHKATNLFSNPTLNLKKTMSPSPLFFLLFLCFLLAPSLLAQSPPSPPSPPSPSSSVACKGTLYPKLCRSILSAIRFSPSDPYGYGKFSIKQSLKQARKLAKVFEDFLKRHQSSPSSSLNHAEVASLGDCKDLNQLNVDYLSSISEELKSAGSSNSELVEKIESYLSAVATNHYTCYDGLVVTKSNIANALAVPLKDVTQLYSVSLGLVTEALDKNLRRNKTRKHGLPNKTFKVRQPLEKLIKFLRTKYTCTKLSNCTRTGRNLKESGSKGILLYDYVFVSSYGIDNYTSIGEAIAAAPNNTKPEDGYFLVYVREGIYEEYVVIPKEKKNILLVGDGINKTIITGNHSFVDGWTTFNSSTFAVSGERFIAVDVTFRNTAGPEKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECEIYGTVDFIFGNAAVVFQDSKIYARKPLPNQKNAVTAQGRTDPNQDTGISIQNCTIDAAPDLAADLNSTASYLGRPWKLYSRTVYLQSYIGNVIQPAGWLEWNGTVGLDTLFYGEFNNYGPGSNTSSRVQWPGYFLLNATQAWNFTVLNFTLGNTWLPDTDIPYTEGLLR* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01575 591 Gene3D - 275 591 IPR012334 -
Lapu5g01575 591 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 210 IPR035513 -
Lapu5g01575 591 NCBIfam pectinesterase inhibitor domain 28 209 IPR006501 GO:0004857
Lapu5g01575 591 PANTHER PECTINESTERASE 35 579 - -
Lapu5g01575 591 ProSitePatterns Pectinesterase signature 2. 423 432 IPR033131 -
Lapu5g01575 591 Pfam Pectinesterase 277 574 IPR000070 GO:0030599|GO:0042545
Lapu5g01575 591 FunFam Pectinesterase 273 589 - -
Lapu5g01575 591 SUPERFAMILY Pectin lyase-like 276 588 IPR011050 -
Lapu5g01575 591 SMART PMEI_2 49 207 IPR006501 GO:0004857
Lapu5g01575 591 Pfam Plant invertase/pectin methylesterase inhibitor 57 206 IPR006501 GO:0004857
Lapu5g01575 591 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 209 IPR035513 -
Lapu5g01575 591 CDD PMEI-like_3 57 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01575 Lapu-Chr5 28931060 28936244 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01575 57 590 Carbohydrate Esterase AT3G10720 62.407 0.0 710
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01575 K01051 - gmx:100816503 1019.61