Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01574 ATGTCATCCTGCAAATCCTACGGGAAAGTTGATGAGCATGAGCAAATGGTGTTGGATGCAAGGAAGAAAACCCGAAAGAGAATCACAATCATAGGGTTGTCCTCAATAGTCCTAGCAGGTGTTGTTTTTGCTGCTGTATTTGGCATTCTTGGCACCACTCGTGACAACTCCTCAGATGATGCCAATGATGCTCACACTCTGACAAATTCAGTGAAGGCTGTTTGTGATGTGACATTGTACAAGGAGTCATGCTACAGCAGCCTTGGTTCTGCCGGGTCGAGGCAATTTCAGCCTCAGGAGTTGTTCATGTTGTCAATGAAGGTGGCCTTATCTGAAGTGTCTAAAGCTGTTGAATATTTCAGTGATCGTGATCATGCAGTTTTACAAGGGGTGGTGAAGAACAGCAGGACTAAGGAGGCTTTGAAAAATTGCAGGGAGCTTTTGGGTCTTGCGGTTGACCATCTGAATAGCTCTTTGACCTCAGGGGAAGAGTTTTCTCTTCTTGAAGTTTTTGAGGATCTTGAAACATGGTTAAGTGCTGCAGGTACATACCAACAGACTTGTATTGAAGGCTTTGAAGATGAAAAAGAAGCAATTAAGACAAGTGTAGTAAGCTACCTTAAAAACTCTACACAGTTCACCAGTAACAGTCTTGCCATCATTACCTGGATCAACAAGGCTGCAACCACATTGAACCTTCGGCGCTTACTGAGTTTGCCTCATCAGAATGAAGCACCAGAATGGCTTCATTCAAAAGATAGGAGGCTGCTTCTAACACAGGATTTGAGGAAGAAAGCTGACATTGTTGTGGCCAAAGATGGCAGTGGAAAATTTAAGAAAATTTCTGATGCACTTAAACATGTTCCTAATAAGAGTAACAAGAGGACTGTGATCTATGTGAAGAGAGGGGTTTACTATGAAAATGTGAGGGTTGAGAAGACCAAATGGAATGTGATGATGATTGGTGATGGAATGACTTCTACCATTGTATCAGCCAGCCGTAACTTTGTGGATGGTACACCAACATTTTCAACAGCAACATTTGCTGTATTTGGAAGGAATTTTATAGCTAGAGATATGGGTTTTCGCAACACTGCTGGTCCACAGAAGCATCAAGCAGTAGCACTGATGACAAGTGCTGATCAAGCAGTTTACTATAGGTGCCACATTGATGCATATCAGGATACTCTCTATGCTCATTCCAACCGCCAATTCTACAGAGAATGCAACATCTATGGCACGGTTGATTTCATTTTTGGCAATTCTGCTGTTGTGATCCAAAACTGTAATATTAGACCAAAGTTACCAATGCATGGCCAGCAAAACACAATCACAGCTCAGGGAAAGATTGACCCTAACATGAACACTGGGATCTCCATTCAGAATTGCAACATTTCACCCTTTGGTAACTTGAGTTCTGTCCAGACATACCTTGGAAGACCCTGGAAGAATTACTCAACCACAGTGTACATGAAATCCAGAATGGAAGGTTTTGTGAACCCCAAAGGCTGGTTACCATGGACAGGGAACTCAGCTCCAGACACCATTTTCTATGCAGAATTTCAGAATGTTGGACCAGGTGCTTCAACAAAGAATAGGGTGAAGTGGAAGGGTTTGAGAACCATAACTAGTGAACAAGCCAGCAGGTTTACTATCAAGGCTTTTCTACATGGAGATAAATGGATTTCTGCAGCAGGTTCCCCATTTAAGTCTGATCTATGA 1722 0.4251 MSSCKSYGKVDEHEQMVLDARKKTRKRITIIGLSSIVLAGVVFAAVFGILGTTRDNSSDDANDAHTLTNSVKAVCDVTLYKESCYSSLGSAGSRQFQPQELFMLSMKVALSEVSKAVEYFSDRDHAVLQGVVKNSRTKEALKNCRELLGLAVDHLNSSLTSGEEFSLLEVFEDLETWLSAAGTYQQTCIEGFEDEKEAIKTSVVSYLKNSTQFTSNSLAIITWINKAATTLNLRRLLSLPHQNEAPEWLHSKDRRLLLTQDLRKKADIVVAKDGSGKFKKISDALKHVPNKSNKRTVIYVKRGVYYENVRVEKTKWNVMMIGDGMTSTIVSASRNFVDGTPTFSTATFAVFGRNFIARDMGFRNTAGPQKHQAVALMTSADQAVYYRCHIDAYQDTLYAHSNRQFYRECNIYGTVDFIFGNSAVVIQNCNIRPKLPMHGQQNTITAQGKIDPNMNTGISIQNCNISPFGNLSSVQTYLGRPWKNYSTTVYMKSRMEGFVNPKGWLPWTGNSAPDTIFYAEFQNVGPGASTKNRVKWKGLRTITSEQASRFTIKAFLHGDKWISAAGSPFKSDL* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01574 573 ProSitePatterns Pectinesterase signature 2. 411 420 IPR033131 -
Lapu5g01574 573 NCBIfam pectinesterase inhibitor domain 64 224 IPR006501 GO:0004857
Lapu5g01574 573 FunFam Pectinesterase 261 573 - -
Lapu5g01574 573 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 225 IPR035513 -
Lapu5g01574 573 SMART PMEI_2 66 220 IPR006501 GO:0004857
Lapu5g01574 573 Pfam Plant invertase/pectin methylesterase inhibitor 70 220 IPR006501 GO:0004857
Lapu5g01574 573 Pfam Pectinesterase 267 559 IPR000070 GO:0030599|GO:0042545
Lapu5g01574 573 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 69 224 IPR035513 -
Lapu5g01574 573 FunFam Pectinesterase 67 225 - -
Lapu5g01574 573 PANTHER PECTINESTERASE 39 563 - -
Lapu5g01574 573 Gene3D - 262 573 IPR012334 -
Lapu5g01574 573 SUPERFAMILY Pectin lyase-like 265 570 IPR011050 -
Lapu5g01574 573 CDD PMEI-like_3 73 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01574 Lapu-Chr5 28925992 28930790 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01574 7 573 Carbohydrate Esterase AT3G10710 57.443 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01574 - - gmx:100811152 1020.76