Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01568 ATGTCCAAAAGCAAAGAGAAAAAGAAGAAAAAGAGCGAAAGCGACGAAGACGACGACGTTTTCTACTACCGTTATAGCAGTGTAAACCCTAACCCTACGCAACACAATCCCAATTCAAATCCCAATCCAAATCCCAAAACCAATAGCAAGGGATCCTCGTCATTGGCACCGTCCAAATCAACGTTGTACGTTTCAAACATCGATTACTCGCTCACCAATTCCGATCTCCACACGCTATTCTCCACCTTCGGCCGAATCGCGCGCGTGACAGTCCTCAAGGACCGCCACACGCGCCTCAGTCGCGGCGTCGCCTTCATCCAGTTTGTCTCCCGCCACGACGCGCGCAACGCAGCTGCGCAGATGCACCAGAAGATCCTCAACGGCCGCACGCTCACCGCCTCCATCGCCGCCGACAACGGCCGCGCGCCCGAGTTCATTCGCAAGCGTGTCTACCGCGACACTGCCCGCTGCTTCGAGTGCGGCGCCGACGGCCACCTCTCCTACGACTGCCCGCGCAACCAGCTCGGCCCCCGCCAGCGCCCCGAGCCCAAACGCCCCCGCCGTGATCCTCACCACCGCGTCGACGACAACGACGATGGCGGAGAGGATTCTGACGGTGTCGGAGGCGGTGCCCGGTTCGAGGATGACAATTGGGCGTCCGTCGTGGATGACGGCGCCGACGAGAGGCTGTTGGCGGGAAACCGTGAGGACGATGATGTTGTGGCTGTGAAGAGTAAGAAGAAGAAGAAGAAATCCGGGTACTTCAGTGATGAGAGTGATGATGATGATGATGACTTTGATGGTTGA 807 0.5787 MSKSKEKKKKKSESDEDDDVFYYRYSSVNPNPTQHNPNSNPNPNPKTNSKGSSSLAPSKSTLYVSNIDYSLTNSDLHTLFSTFGRIARVTVLKDRHTRLSRGVAFIQFVSRHDARNAAAQMHQKILNGRTLTASIAADNGRAPEFIRKRVYRDTARCFECGADGHLSYDCPRNQLGPRQRPEPKRPRRDPHHRVDDNDDGGEDSDGVGGGARFEDDNWASVVDDGADERLLAGNREDDDVVAVKSKKKKKKSGYFSDESDDDDDDFDG* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01568 268 ProSiteProfiles Zinc finger CCHC-type profile. 156 172 IPR001878 GO:0003676|GO:0008270
Lapu5g01568 268 MobiDBLite consensus disorder prediction 217 257 - -
Lapu5g01568 268 SMART c2hcfinal6 156 172 IPR001878 GO:0003676|GO:0008270
Lapu5g01568 268 MobiDBLite consensus disorder prediction 178 199 - -
Lapu5g01568 268 Gene3D - 147 191 - -
Lapu5g01568 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 138 IPR000504 GO:0003723
Lapu5g01568 268 MobiDBLite consensus disorder prediction 7 22 - -
Lapu5g01568 268 MobiDBLite consensus disorder prediction 26 57 - -
Lapu5g01568 268 Gene3D - 1 144 IPR012677 -
Lapu5g01568 268 SUPERFAMILY Retrovirus zinc finger-like domains 140 173 IPR036875 GO:0003676|GO:0008270
Lapu5g01568 268 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 11 263 IPR044598 GO:0000398|GO:0005689
Lapu5g01568 268 SMART rrm1_1 61 134 IPR000504 GO:0003723
Lapu5g01568 268 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein 4 144 - -
Lapu5g01568 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 131 IPR000504 GO:0003723
Lapu5g01568 268 SUPERFAMILY RNA-binding domain, RBD 28 143 IPR035979 GO:0003676
Lapu5g01568 268 MobiDBLite consensus disorder prediction 169 268 - -
Lapu5g01568 268 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01568 Lapu-Chr5 28883505 28884611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01568 62 136 Eukaryotic Initiation Factors Gene Family AT1G34140 34.667 7.89e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01568 K13154 - gmx:100814914 308.531