Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01566 ATGAGTCAAATGACACCTGAGATTGATGACAATGTGCATGGTGAGGATCAGACTGGGTCACAGTTCAATGACGAGGGTAATGGAGGTGTTGTTCTGAAGAAAGGGCCATGGACAGCTGCTGAAGATGTTATTTTGGTGGACTATGTCAATAAGCATGGAGAGGGAAATTGGAATGCTGTTCAGAAGTACTCAGGCCTTTCTCGTTGTGGAAAAAGTTGCCGATTGCGATGGGCCAATCACCTAAGGCCAAACTTAAAGAAAGGTGCATTTACTGCAGAAGAGGAGCAGATGATTGCTGAACTCCATGCCAAAATGGGAAACAAGTGGGCACGCATGGCGGCACATTTGCCTGGTCGTACAGATAACGAAATAAAAAACTACTGGAACACCCGGATGAAGAGGCGTCAACGGGCTGGCTTGCCACTTTATCCTCCCGAAGTAGTTTTGCAAGCATTTCAAGATAGTAAGCATGGCCAAGGTACTAGTGAAATCAGTGATGGAGATGGAGGCCACCGTGATTTCTTGGAGAAAAACAATTATGAAATACATGATGCAATATTTGACAGTCTGAAGGAAAATCAGGGAATCTTACCTTTTGTGCCTGAGCTCCCTGATATTTCTGCTAATAGCATTCTGCCAAATGTTCTTGGTTCTCCACCATACTGTAATTTCCTGCCATCAACATTACCTAATCATGATCATCTTCAAGAGTCATCAGTGTCTTTTATCGGTTCCAGTGAATTGAACACTAATGGGTTTTATCCATTTGACCACTTTAAGGATAATACGTCTGATAAGATTGCAGAACCATTTGGATTGCATTCTCCCCTTGATCATGGTGCCTCCTCATATGGCTCTATTTGTTACAGCCATTCATTGTCGAATGACAATTACTCTACTTCTAAGCTGACTTCTGAGGCTGTGAAGTCAGAGCTCCCTTCACTCCAATATCCAGAAACTGAATTTAGCAGCTGGGGTACCTCTCCCCCACCTCCATTGAATGAGTCTATTGATGTTTTCATTCATTCTCCTCAACCACCTTATGCACTAGACTCAGGTTCTTCTTCACCACTCAGTTGTTGCTTCCTTAATGAATTTGTTTATCAGCAGGCGAAGACTCTTAGTTATTCAAAGAATAATTGGTCTGACAAGAGTTCAAATTCATCCATTGCAACTCCTGGTGACCGAGCCGAGAGTTCGGCTTTGAATATGTACGAGACAGAGTGGGAGGATTATGCTGACCCTGTATCCCCGTTTGGTGCAACTTCAATCCTGAATGAGCATACTGTTGTTGGCACCAATGGAAAGTCGTGGGACGCATGGGAACCTTTTCGGACCTTTAATGGAAACAATGAGAAATTGCAGTCAGTTGATCAGGTTTTGGCCCCTAAGAGTGAAAATCAATCCATGTCTCTGTTGAATCTCACTTGGCCAGATGTCTTGCTGGCCTCAGATTGGCACGATCTGTATTCTGAGCATGACGGCAGCATGATTGATGCTAGTGATGATATTAAGAGACAGTAA 1524 0.435 MSQMTPEIDDNVHGEDQTGSQFNDEGNGGVVLKKGPWTAAEDVILVDYVNKHGEGNWNAVQKYSGLSRCGKSCRLRWANHLRPNLKKGAFTAEEEQMIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRMKRRQRAGLPLYPPEVVLQAFQDSKHGQGTSEISDGDGGHRDFLEKNNYEIHDAIFDSLKENQGILPFVPELPDISANSILPNVLGSPPYCNFLPSTLPNHDHLQESSVSFIGSSELNTNGFYPFDHFKDNTSDKIAEPFGLHSPLDHGASSYGSICYSHSLSNDNYSTSKLTSEAVKSELPSLQYPETEFSSWGTSPPPPLNESIDVFIHSPQPPYALDSGSSSPLSCCFLNEFVYQQAKTLSYSKNNWSDKSSNSSIATPGDRAESSALNMYETEWEDYADPVSPFGATSILNEHTVVGTNGKSWDAWEPFRTFNGNNEKLQSVDQVLAPKSENQSMSLLNLTWPDVLLASDWHDLYSEHDGSMIDASDDIKRQ* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01566 507 FunFam MYB-related transcription factor 33 86 - -
Lapu5g01566 507 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
Lapu5g01566 507 CDD SANT 36 81 IPR001005 -
Lapu5g01566 507 MobiDBLite consensus disorder prediction 1 29 - -
Lapu5g01566 507 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 136 IPR017930 -
Lapu5g01566 507 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 5 493 - -
Lapu5g01566 507 FunFam Transcription factor GAMYB 89 135 - -
Lapu5g01566 507 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 81 IPR017930 -
Lapu5g01566 507 CDD SANT 89 130 IPR001005 -
Lapu5g01566 507 SMART sant 86 134 IPR001005 -
Lapu5g01566 507 SMART sant 33 83 IPR001005 -
Lapu5g01566 507 ProSiteProfiles Myb-like domain profile. 32 81 IPR001005 -
Lapu5g01566 507 Gene3D - 33 86 - -
Lapu5g01566 507 SUPERFAMILY Homeodomain-like 33 128 IPR009057 -
Lapu5g01566 507 Gene3D - 89 135 - -
Lapu5g01566 507 Pfam Myb-like DNA-binding domain 87 130 IPR001005 -
Lapu5g01566 507 Pfam Myb-like DNA-binding domain 34 81 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01566 Lapu-Chr5 28864334 28869116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01566 29 500 MYB Transcription Factor Family AT5G06100 41.889 1.81e-104 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu5g01566 Myb_DNA-binding 9.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01566 K09422 - gmx:100805804 867.07