Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01564 ATGAGCAGCCATGAAGCCCACCAAACGGTTGCACAATCTGTTTGCTCTGTGTGCTATAACAGAAGACCACAAAGTGAAAGGAACAGAAAGAGGGAGTTCACATATGTTGAGTTGTATGCAGCCACACAAGGGTTTTCCCCTAAGAACTTTCTCTCAGAAGGGGGGTTTGGTTCTGTCTATAAAGGGGAGTTGTGTGGACAGAAGATTGCTGTTAAGCAACACATGTGTGCAAACCGGAAAGGAGAAAAGGAATTCAAGTCTGAAGTTGATGCACTCAGCAAAGCAAGACATGAGAATGTGGTCATGCTGTTAGGATCATGCTCAGAAGGGAACCATAGACTTCTTGTGTATGAATATGTCTGCAATGGTTCATTAGACCAACATTTATCACAACATTCTCGTAAACTTCTTAATTGGCAAGACAGAGTGAAAGTAGCTGATGGAGCTGCCAAAGGATTGCTATACCTGCATGAGAATAACATAATACACAGAGATATGACACCAAATAACATTCTTCTTACACATGATTATGATGTATTGCTTGGCGATTTTGGTTTGGCTAGAACTGTGATTGAAGACTCCTCATACTCTACAGACTGTGTTGGGAATCTGGCTTATATGGCACCAGAATATGCAGAATTTGGTAAAGTTTCAATTAAGACAGATGTGTATTCCTTTGGGGTGGTTCTGCTACAGCTAATAACTGGAATGAGGACCACAGACAAACGAGTTGGAGATAAAGGTCTGGTGGGATGGGCTAGACCACTACTAAAGGAAGGAAAATGCCAAGCCCTTATTGATGGGAGAATGATCAACTCCCATGACTGCCATCAGCTCTATTGGATGAGCCGTTTAGCTGGAAATTGTCTTCAGAGGGATCCTCAAAAGCGATTGCATATGAATACAGTGGTGAAGGCCTTAAACCAGATAGGCAAAGGTTGTAGCTGCATTGTGAGAAAAGATCACACTCTTCTCATCTCAGGCCATTCTAGGTCAAAAGATGATACACAGAACTCCTCACAATCAGAAGAGTGCAAGTGA 1041 0.4236 MSSHEAHQTVAQSVCSVCYNRRPQSERNRKREFTYVELYAATQGFSPKNFLSEGGFGSVYKGELCGQKIAVKQHMCANRKGEKEFKSEVDALSKARHENVVMLLGSCSEGNHRLLVYEYVCNGSLDQHLSQHSRKLLNWQDRVKVADGAAKGLLYLHENNIIHRDMTPNNILLTHDYDVLLGDFGLARTVIEDSSYSTDCVGNLAYMAPEYAEFGKVSIKTDVYSFGVVLLQLITGMRTTDKRVGDKGLVGWARPLLKEGKCQALIDGRMINSHDCHQLYWMSRLAGNCLQRDPQKRLHMNTVVKALNQIGKGCSCIVRKDHTLLISGHSRSKDDTQNSSQSEECK* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01564 346 Gene3D Phosphorylase Kinase; domain 1 16 119 - -
Lapu5g01564 346 Pfam Protein tyrosine and serine/threonine kinase 49 307 IPR001245 GO:0004672|GO:0006468
Lapu5g01564 346 ProSiteProfiles Protein kinase domain profile. 45 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g01564 346 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 120 322 - -
Lapu5g01564 346 ProSitePatterns Tyrosine protein kinases specific active-site signature. 161 173 IPR008266 GO:0004672|GO:0006468
Lapu5g01564 346 Gene3D Transferase(Phosphotransferase) domain 1 120 323 - -
Lapu5g01564 346 FunFam Proline-rich receptor-like protein kinase PERK8 5 119 - -
Lapu5g01564 346 SUPERFAMILY Protein kinase-like (PK-like) 29 309 IPR011009 -
Lapu5g01564 346 PIRSF ILK 16 323 - -
Lapu5g01564 346 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 18 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01564 Lapu-Chr5 28850692 28853545 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01564 28 341 Trihelix Transcription Factor Family AT5G38560 42.202 1.03e-78 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Lapu5g01564 PK_Tyr_Ser-Thr 5.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01564 - - gmx:102663919 597.816