Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01563 ATGACTACAGAAACTCAGAGGGTAGTGGTGATCCAGGATGCATCAAGAGATGTTAGTTCAAAGGCCATCCTTGGGGCCCTGGAAAAGTTTTCTCTTAAAGCTGGTGATCAGCTTATAATTGTTGCTATCCTTGATTGGATTAGCAGTCCCATGGGTTACATGGTCAGAGTTGATTCCAGTTCAATGATTTCAACAAACCAGAAAATAATTGAAAAAAAGCATACCAAGAAAAAGAAAGAATATCTTATGAACAACAACATCAAGGAGATCTCCAACTACTGTAAATTGAATGAGATTGGATTCCAACTTGAAGTACTAGTAGGCCCTACTGCAGAGGTTGCCTCTAATGCTGCCAAGGATTTTCAAGCGACAAGTTTAATTTTATTTAGACAGATCCACAAAGATATGAAGTATTTCATGCGCAGGCATCCTTGTGGTATGTATAGGATAACAAGTGACAATTCAATTGAGAGGTTGAAAGATCCAAGATCAACATCCAGCACCAAATCACTTGTCGACAGGCAAGAAAATGTAAGCTATAAAGAAATGTTTCCAGGAAGTGAAGAGGAAGAACGTTCTCTTCAGATGTCCAGGTCTTCATCAAGTGATATGTTGACATCAACTGGAGTCTCAAGTCAGTGGAGTGCAGAAGTCTCCACTTCTAGTTTCGGTAGCTCGCGGTATGGCCGTCAATACCAAGAGGGAAATTTCTATTCAAACATAGAACAAGAAACAGCAGGGAACCAATCACTATTTCACATTTCAGAGGATGAAGAAATGAACCAATTGGAAGAAAATAGAAATGAGAAACACGGTAGATATAATGAAACATCACATGTGGAGGAAGAATTTACAAATCCACTTTGTTCTGTGTGCAATAATCGACGACCAAAAGTTGGATTGAAGAGAGATTTCAGTTATGCAGAGCTCTGTACTGCTACACAAGGATTTTCTGCCAAGAACTTTCTGTCAGAAGGGGGATTTGGATCTGTGTACAAAGGACTGATTAATGGAATGAAGGTTGCTGTTAAGCAACACAAAAATTCAGGCTTCCAAGGAGAGAAGGAATTTAAGTCTGAAGTGAATCTACTTAGTAAAGCAAGACATGAGAATGTGGTTGTGCTGCTAGGTTCATGCTCAGAAGGAAATAATAGACTTCTTGTGTATGAATATGTCTGCAATGGCTCACTTGACCAACATCTATCAGAACACTCTCGATTACCTCTTAGTTGGGAAGATAGGATCATTATAGCAATTGGAGCTGCCAAAGGCTTACTATACTTACACAAGAATAACATGATACACAGAGATGTGAGACCAAACAATATCCTTATAACACATGATCATCGACCATTGCTTGGAGACTTTGGATTAGCAAGAAATCAAAATCAAGACTCCATACACTCAACGGAAGTTGTTGGAACTTTGGGGTATTTGGCACCAGAATATGCAGAACATGGGAAAGTGTCTAGCAAAACAGATGTATACTCTTTTGGAGTGGTTCTACTACAGCTAATAACAGGAATGAGAACTACAGATAGAAGACTTGGAGGAAGAAGTCTTGTGGGATGGGCAAGGCCACTTTTAAGAGAGAGGAACTACCCAGATTTAATTGACGAAAGGATCATTAACTCTCATGATGTCCATCAACTATTTTGGATGGTTCGAATAGCAGAGAAATGTCTAAGCAGGGAGCCTCAAAGGAGGCTAAATATGATTCAGGTTGTTGATGCTTTGACTGACATAGTGGAAGGAAGAACATGTGACATCATATTAAGAAATTACTCCCCTGTAAGATCAGATTCGATATATAGTGCATCAGACTATGATGAATCTGAAGATGAAATGAAGGAATCCTTCAAGTTTGAAGATGGTTTACCAACCTACAGTTCAGAATCCACAGATAGTAATAGCATAAGTCAGATGATGCACATGAATGTAAGACAGCCACCATCCCCTCCAATTCAAGCATCTCTCTAA 1980 0.3924 MTTETQRVVVIQDASRDVSSKAILGALEKFSLKAGDQLIIVAILDWISSPMGYMVRVDSSSMISTNQKIIEKKHTKKKKEYLMNNNIKEISNYCKLNEIGFQLEVLVGPTAEVASNAAKDFQATSLILFRQIHKDMKYFMRRHPCGMYRITSDNSIERLKDPRSTSSTKSLVDRQENVSYKEMFPGSEEEERSLQMSRSSSSDMLTSTGVSSQWSAEVSTSSFGSSRYGRQYQEGNFYSNIEQETAGNQSLFHISEDEEMNQLEENRNEKHGRYNETSHVEEEFTNPLCSVCNNRRPKVGLKRDFSYAELCTATQGFSAKNFLSEGGFGSVYKGLINGMKVAVKQHKNSGFQGEKEFKSEVNLLSKARHENVVVLLGSCSEGNNRLLVYEYVCNGSLDQHLSEHSRLPLSWEDRIIIAIGAAKGLLYLHKNNMIHRDVRPNNILITHDHRPLLGDFGLARNQNQDSIHSTEVVGTLGYLAPEYAEHGKVSSKTDVYSFGVVLLQLITGMRTTDRRLGGRSLVGWARPLLRERNYPDLIDERIINSHDVHQLFWMVRIAEKCLSREPQRRLNMIQVVDALTDIVEGRTCDIILRNYSPVRSDSIYSASDYDESEDEMKESFKFEDGLPTYSSESTDSNSISQMMHMNVRQPPSPPIQASL* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01563 659 Gene3D Phosphorylase Kinase; domain 1 290 391 - -
Lapu5g01563 659 PANTHER OS01G0253100 PROTEIN 196 583 - -
Lapu5g01563 659 MobiDBLite consensus disorder prediction 197 211 - -
Lapu5g01563 659 FunFam Proline-rich receptor-like protein kinase PERK8 279 391 - -
Lapu5g01563 659 SUPERFAMILY Protein kinase-like (PK-like) 303 605 IPR011009 -
Lapu5g01563 659 MobiDBLite consensus disorder prediction 158 211 - -
Lapu5g01563 659 ProSitePatterns Tyrosine protein kinases specific active-site signature. 433 445 IPR008266 GO:0004672|GO:0006468
Lapu5g01563 659 Gene3D Transferase(Phosphotransferase) domain 1 392 592 - -
Lapu5g01563 659 ProSiteProfiles Protein kinase domain profile. 317 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g01563 659 SMART tyrkin_6 317 579 IPR020635 GO:0004713|GO:0006468
Lapu5g01563 659 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 392 594 - -
Lapu5g01563 659 MobiDBLite consensus disorder prediction 626 659 - -
Lapu5g01563 659 Pfam Protein tyrosine and serine/threonine kinase 320 578 IPR001245 GO:0004672|GO:0006468
Lapu5g01563 659 MobiDBLite consensus disorder prediction 615 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01563 Lapu-Chr5 28843449 28847966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01563 305 624 Trihelix Transcription Factor Family AT1G70460 44.311 2.17e-76 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Lapu5g01563 PK_Tyr_Ser-Thr 7.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01563 - - gmx:100794450 1085.86