Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01560 ATGCTTCCAAACTTGCTAAGTCAGGTAGCAAATGCAAATGTCTCGTTGCAACGTTTGGAGGAACTGTTCTTAGCTGAGGAGAGAAATTTAAAACAAAATCCCCCTATTGAACCTGGTCTTCCAGCCATCTCAATTGAGAATGGATACTTTTCATGGGATCCTAAGGAAGAGAAACCAATATTATCAAATATCAATGTGGAAATACCAGTTGGCAGCTTAGTTGCAATCATTGGCGGTACTGGAGAAGGCAAAACGTCACTTATTTCAGCAATGATTGGAGAGTTACCACCTTTAGCAGATGGAAATGCTACAATCAGAGGCACTGTTGCTTATGTACCTCAGATTTCATGGATTTACAATGCCACGGTTCGTGAAAACATACTATTTGGATCAAAATTTGAGTATGAACGATATCGGAAGATCATTGATATCACTGCTTTACAGCATGATCTTAACTTATTACCTGGACTTGATTTTACAGAGATTGGAGAAAGAGGAGTCAATATTAGTGGTGGACAAAAGCAAAGAGTTTCCATAGCTAGGGCTGTATACTCAAATTCAGATGTATATATATTTGATGATCCATTGAGTGCTCTTGATGCTCATATTGCTCAAGAGGTTTTCAGGAACTGTATAAAGGAAGGGCTGCGAGGAAAAACCAGGGTTCTTGTCACCAATCAGCTACATTTTCTCCCTCAGGTGGATAAGATCATTCTGGTTAGTGAAGGCATGATTAAGGAGCAGGGAACATTTGAGGAGTTATCAAAAAGTGGGCCTCTATTTCAAAAACTAATGGAAAATGCAGGGAAAATGGAACAACAAGCAGATAATAACGGAGATAGTGAAAACCATGACAAGGATACAAATTTACCCTTGAATAATGAAGCAATTGTTGAATTACCAAGTGATACAAGCTATGAGAAGAAAGGAAAATTACGAAAATCAGTACTTATCAAGAAAGAGGAGCGGGAGACAGGCGTGGTTAGTTGGAAAGTTATAATGCGGTACAAATCAGCACTAGGAGGACTGTGGGTAGTTTCCATACTCTTTGGATGTTATACACTAACCGAAGTTCTTCGAATTTCAAGTAGTACATGGTTAAGCGTGTGGACATCTCAAGATTCAACTGCAGATAATAATCCGGCATATTTTCTTTTGATCTATGCACTTTTCTCATTTGGACAGGTATCTGTGGCACTTGCCAACTCTTATTGGTTGATCGTTTCAAGTCTTCGTGCTGCCAAAAGATTGCACAATGCAATGCTGGATAAAATCCTCCGGGCTCCTATGGTATTCTTCCAAACTAATCCGGTTGGTCGCATAATTAATAGGTTTGCAAAAGATACGGGAGATATAGATACCAATGTTTTTAACTTGGTGAACACGTTTTTGGGGCAAGTCTGGCAACTACTTTCCACATTTGTTCTTATCGGCACTGTGAGCACCATTTCCCTGTGGGTCATAATGCCACTTCTGATATTCTTTTATGCAGCTTATATATATTATCAGAGCACGGCTCGAGAGGTAAAGCGCATGGATTCCATTACAAGATCTCCTGTTTATGCACATTTTGGTGAATCACTGAATGGTTTGTCAAGCATCCGTGCTTATAAAGCATATGACAGAATGGCACACATTAATGGAAAATTCATGGATAACAACATTAGATTCACTCTTATGAACATAAGTTCAAATCGTTGGCTCACCATAAGGCTAGAAACATTAGGAGGCCTCATGATTTGGCTGATAGCAACATCTGCAGTCTTGCAGAATGCAAGAGCTTCAAACCAGGCTTTGTTTGCATCTACAATGGGATTACTTCTCAGTTATACTTTGAACATAACAAATCTCTTGAGTGGTGTCCTTAGGCAAGCAAGTCGAGCTGAAAACAGTTTAAACGCTGTTGAGCGTGTTGATACATATATAAATTTAGAAACTGAGGCTCCAGGTGTAATCGAGAACAACCGTCCACCACCCGGATGGCCAACCTCAGGATCAGTTGAGTTTGAGGATGTTGTTCTGAGATACCGGCCTGAACTTCCTCCAGTGCTGCATGGATTGTCCTTCACCGTACCTCCAACTGAGAAGATAGGGGTAGTTGGAAGAACTGGTGCAGGAAAATCTAGTATGCTTAATGCATTATTTCGGATTGTGGAACTAACGAAAGGAAGAATCATCATTGACGGTTGTGATATTTCTACATTTGGACTAGCAGATCTACGAAAAGTTCTCACTATCATACCACAGTCTCCAGTTGTTTTCTCTGGGACTGTTCGTTTCAATCTTGATCCATTTAATGAGCACAATGATGCTGATCTATGGGAGGCTTTAGAAAGGGCACATCTGAAGGACGTAATAAGAAGAAAGCCATTTGGTCTAGATGCTCAGGTTTCAGAGGGAGGAGATAATTTCAGTGTTGGGCAGAGGCAACTGCTGAGTCTAGGTAGAGCATTGCTTCGAAGATCGAAGGTTCTTGTCCTGGATGAAGCTACTGCTGCTGTAGATGTTAGAACTGATGCCCTTATACAGAAAACTATCAGACAGGAATTTCAGTCCTGTACAATGCTCATCATTGCACATAGACTAAATACAATCATTGACTGCAATCGGATTCTGCTGCTTGATTCTGGCCGGGTCCTTGAATACAGTTCACCAGAGGAACTCCTTCAAAATGAAGGAACTGCTTTCTACAAGATGGTTCGAAGTACTGGAGAAGCAAATGCTGAGTATCTATGTAGCCTAGTATTTGGAAGAACAGATAACAATAATGAATATAACAAGGAATTGGAAAACCGTATGAGACAATTAGCTTCTACTCACTGGACCGCTGCTACCCAGTTTGCCATAGCTGCTACCCTTTCTTCACTACACCATCAGCTTCAAAAACCAAGTAGTGAAGACAGTGAAGATATTCTTGATAAAACAAAGGATGCAGTTACAACACTTCAAGAAGTTCTAGTGGGGAAACATGATGAAGCCATAGAAGAGACACTGTATAAATACCATATTCCTACAGATAGATGGTGGTCTACTCTCTACAAAGTCATTGAAGGTCTTGCTATCTTGAGGAGGTTGCCTAAAGACAACATTCAACAACTACAACATGATTTTGATGAGAGATCTTTTCACTAA 3132 0.4026 MLPNLLSQVANANVSLQRLEELFLAEERNLKQNPPIEPGLPAISIENGYFSWDPKEEKPILSNINVEIPVGSLVAIIGGTGEGKTSLISAMIGELPPLADGNATIRGTVAYVPQISWIYNATVRENILFGSKFEYERYRKIIDITALQHDLNLLPGLDFTEIGERGVNISGGQKQRVSIARAVYSNSDVYIFDDPLSALDAHIAQEVFRNCIKEGLRGKTRVLVTNQLHFLPQVDKIILVSEGMIKEQGTFEELSKSGPLFQKLMENAGKMEQQADNNGDSENHDKDTNLPLNNEAIVELPSDTSYEKKGKLRKSVLIKKEERETGVVSWKVIMRYKSALGGLWVVSILFGCYTLTEVLRISSSTWLSVWTSQDSTADNNPAYFLLIYALFSFGQVSVALANSYWLIVSSLRAAKRLHNAMLDKILRAPMVFFQTNPVGRIINRFAKDTGDIDTNVFNLVNTFLGQVWQLLSTFVLIGTVSTISLWVIMPLLIFFYAAYIYYQSTAREVKRMDSITRSPVYAHFGESLNGLSSIRAYKAYDRMAHINGKFMDNNIRFTLMNISSNRWLTIRLETLGGLMIWLIATSAVLQNARASNQALFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVDTYINLETEAPGVIENNRPPPGWPTSGSVEFEDVVLRYRPELPPVLHGLSFTVPPTEKIGVVGRTGAGKSSMLNALFRIVELTKGRIIIDGCDISTFGLADLRKVLTIIPQSPVVFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRKPFGLDAQVSEGGDNFSVGQRQLLSLGRALLRRSKVLVLDEATAAVDVRTDALIQKTIRQEFQSCTMLIIAHRLNTIIDCNRILLLDSGRVLEYSSPEELLQNEGTAFYKMVRSTGEANAEYLCSLVFGRTDNNNEYNKELENRMRQLASTHWTAATQFAIAATLSSLHHQLQKPSSEDSEDILDKTKDAVTTLQEVLVGKHDEAIEETLYKYHIPTDRWWSTLYKVIEGLAILRRLPKDNIQQLQHDFDERSFH* 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01560 1043 CDD ABCC_MRP_domain1 43 243 - -
Lapu5g01560 1043 SMART AAA_5 693 886 IPR003593 GO:0016887
Lapu5g01560 1043 SMART AAA_5 70 250 IPR003593 GO:0016887
Lapu5g01560 1043 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 348 630 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu5g01560 1043 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 908 - -
Lapu5g01560 1043 ProSitePatterns ABC transporters family signature. 169 183 IPR017871 GO:0005524|GO:0016887
Lapu5g01560 1043 Gene3D - 651 903 IPR027417 -
Lapu5g01560 1043 FunFam ABC transporter C family member 2 37 283 - -
Lapu5g01560 1043 Pfam ABC transporter transmembrane region 348 595 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu5g01560 1043 ProSitePatterns ABC transporters family signature. 804 818 IPR017871 GO:0005524|GO:0016887
Lapu5g01560 1043 Gene3D ABC transporter type 1, transmembrane domain 308 648 IPR036640 GO:0005524|GO:0016020
Lapu5g01560 1043 Coils Coil 2 22 - -
Lapu5g01560 1043 SUPERFAMILY ABC transporter transmembrane region 330 647 IPR036640 GO:0005524|GO:0016020
Lapu5g01560 1043 FunFam Multidrug resistance-associated protein member 4 651 903 - -
Lapu5g01560 1043 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 667 901 IPR003439 GO:0005524
Lapu5g01560 1043 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 266 IPR027417 -
Lapu5g01560 1043 Gene3D - 19 293 IPR027417 -
Lapu5g01560 1043 Pfam ABC transporter 61 196 IPR003439 GO:0005524
Lapu5g01560 1043 CDD ABCC_MRP_domain2 665 885 - -
Lapu5g01560 1043 Pfam ABC transporter 684 832 IPR003439 GO:0005524
Lapu5g01560 1043 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 267 IPR003439 GO:0005524
Lapu5g01560 1043 FunFam ABC transporter C family member 2 310 648 - -
Lapu5g01560 1043 CDD ABC_6TM_ABCC_D2 346 642 IPR044726 GO:0140359
Lapu5g01560 1043 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 656 899 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01560 Lapu-Chr5 28813768 28828979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01560 664 901 Calmodulin-binding Proteins AT2G36910 32.377 2.22e-31 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01560 - K05665 vun:114175221 1982.99