Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01552 ATGATGTATCAATGGATATTCATCATCAAATTGGTGTACCTTGTTTGCTTTGTTGCTGGTCAGAACAGTAGCAACTCACAACCACTTGATTATAGATATGCTTGTTTGGACCAATCTTCTGTTCCTCCCTCTACCACATACCAAGCCAACCTCAAGAATTTGATGGCTTCCCTCGCATCTGATTCTGCTACCAGCAATGGTTTTGGGAATAGAACTTCAGGTATTGATCAAAACATGGTTTATGGACTCTACCTTTGCCGTGGTGATGTGAACACCAGCCTTTGCCACTCATGCGTCCAAAACTCTAGCACCTTGCTCATGCAGCACTGCCCCAACAATGCTTCAGCTGTTTTCTGGTACCCCTTTTGCCTTCTGAGGTACTCAAATCAGAATTTCTTTGGCAACCTCACCATTAGGCCAAGGATTCCTATGTTTGATGCGACACAGAATTTTACTAGTGCTGGAGAATTTGACAGTGATGCTCAGGTTTTGATGAATGGTTTGATACAAATGGGGTCAGAGGGGCCCTTGATGTTTGGGACACATATGTTCAACATAAATGGCACTCAAAGAAGATATGGTTGGGTGCAGTGCAGCAGGGATATTACAACCGAGGAATGCAGAACATGTTTGAGCAGTATGCTTGAGGATGTTGCAAGTTGTTGTCAGGAGAAGCGGGTGTGGCGTGTCTTTTCTCCAAGTTGTGTTGTGATGTATGAAACTCAGCCTTTCTTTTTGAATGGGACTGATTCTGCGCCAGCACCTCAGCAAGCTAATGCAGCCACAGATGGAAATAACAGAAGGTGGTGGTTTATAGTAATCATTGCCGTTGCTGGAATTGTAGTACTAGCTGTATTGGCTATCAGCATATACTACTGCTGTTTGAAAAAGAAAAAAGGCAAACAAACTATACAAGAGGAGGGACTAAATTCAATGTTTTCTCAAGATCAAACAGATAAGGAGGAGAATATGAACACTGACCTTCCTATGATGCCTCTGAGTATTATTCTAAAAAGTACAAACAATTTTTCTGATGAACAAAAACTGGGGAAAGGTGGATTTGGACCTGTGTATAAGGGTATATTACCAGATGGAAGACAAATTGCTGTTAAAAGGCTTTCAAAAACTTCAGTTCAAGGTGGGGAGGAATTCAAGAATGAAGTAATATTGATTGCGAAATTGCAGCATCGCAACCTTGTGAGACTGTTGGCTGGCTGCATTGAGCAAAATGAAAAGCTGCTAGTCTATGAATACATGCCAAATTCAAGCCTTGATTTCCACCTATTTGATATGAATAAGGGTGTACATCTGGACTGGAAAAACCGATTAAACATTATAAATGGGATTGCTAAAGGGCTTCTATATCTACATGAAGATTCAAGACTAAGAGTTATTCACAGAGACCTAAAAGCTAGCAACATTCTACTAGATCATGAAATGAATCCTAAAATCTCAGACTTTGGATTGGCAAGAGCATTTGGAGGAGACCAGAAGCAGGCAAACACAATTAGAGTTGTTGGAACTTACAGTGGATACATGGCTCCAGAGTATGCTATGGAAGGCTTGTTTTCAGTGAAGTCAGATGTTTTCAGCTTTGGTGTTCTTTTGCTAGAGATCATCAGCGGAAAAAGGAGCAGTAAATTCTATCTGTCAGATCAAGGCCAAAGCCTTCTCATATATGCATGGAACCTCTGGTGTGAAAGCAAAGGCTTGGAACTGATGGATCCATCAATAGAAAAATCAAGTGTACACAGTGAAGTTGTGAAGTGTATGCACATTGGACTATTGTGTGTGCAAGAAGATGCAGCAGATAGACCAACAATGTCAATGGTAGTTCATATGCTTGCAAGTGATGCAATGAGTCTTCCCAGCCCCACACGCCCTGCATTTTCTGTTGGAAGAACTGTGATTGAACGAGAGTCTTCATCAAACACTTCTATGCATTACTCTGTCAATGAACTAACAGTCTCTGAAGTGATACCAAGGTGA 1989 0.4123 MMYQWIFIIKLVYLVCFVAGQNSSNSQPLDYRYACLDQSSVPPSTTYQANLKNLMASLASDSATSNGFGNRTSGIDQNMVYGLYLCRGDVNTSLCHSCVQNSSTLLMQHCPNNASAVFWYPFCLLRYSNQNFFGNLTIRPRIPMFDATQNFTSAGEFDSDAQVLMNGLIQMGSEGPLMFGTHMFNINGTQRRYGWVQCSRDITTEECRTCLSSMLEDVASCCQEKRVWRVFSPSCVVMYETQPFFLNGTDSAPAPQQANAATDGNNRRWWFIVIIAVAGIVVLAVLAISIYYCCLKKKKGKQTIQEEGLNSMFSQDQTDKEENMNTDLPMMPLSIILKSTNNFSDEQKLGKGGFGPVYKGILPDGRQIAVKRLSKTSVQGGEEFKNEVILIAKLQHRNLVRLLAGCIEQNEKLLVYEYMPNSSLDFHLFDMNKGVHLDWKNRLNIINGIAKGLLYLHEDSRLRVIHRDLKASNILLDHEMNPKISDFGLARAFGGDQKQANTIRVVGTYSGYMAPEYAMEGLFSVKSDVFSFGVLLLEIISGKRSSKFYLSDQGQSLLIYAWNLWCESKGLELMDPSIEKSSVHSEVVKCMHIGLLCVQEDAADRPTMSMVVHMLASDAMSLPSPTRPAFSVGRTVIERESSSNTSMHYSVNELTVSEVIPR* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01552 662 SUPERFAMILY Protein kinase-like (PK-like) 325 646 IPR011009 -
Lapu5g01552 662 SMART serkin_6 343 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g01552 662 ProSiteProfiles Protein kinase domain profile. 343 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g01552 662 ProSiteProfiles Gnk2-homologous domain profile. 29 132 IPR002902 -
Lapu5g01552 662 Pfam Salt stress response/antifungal 40 130 IPR002902 -
Lapu5g01552 662 Pfam Salt stress response/antifungal 149 241 IPR002902 -
Lapu5g01552 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Lapu5g01552 662 Pfam Protein tyrosine and serine/threonine kinase 346 615 IPR001245 GO:0004672|GO:0006468
Lapu5g01552 662 ProSiteProfiles Gnk2-homologous domain profile. 139 244 IPR002902 -
Lapu5g01552 662 Pfam Domain of unknown function (DUF3403) 617 662 IPR021820 GO:0004674
Lapu5g01552 662 FunFam Cysteine-rich receptor-like protein kinase 10 142 244 - -
Lapu5g01552 662 Gene3D - 143 244 IPR038408 -
Lapu5g01552 662 Gene3D - 29 132 IPR038408 -
Lapu5g01552 662 CDD STKc_IRAK 349 615 - -
Lapu5g01552 662 FunFam Liguleless narrow1 419 623 - -
Lapu5g01552 662 Gene3D Transferase(Phosphotransferase) domain 1 419 622 - -
Lapu5g01552 662 Gene3D Phosphorylase Kinase; domain 1 304 418 - -
Lapu5g01552 662 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 39 658 - -
Lapu5g01552 662 FunFam Cysteine-rich receptor-like protein kinase 28 31 131 - -
Lapu5g01552 662 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 308 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01552 Lapu-Chr5 28735340 28752362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01552 26 662 Receptor kinase-like Gene Family AT4G05200 40.332 8.37e-170 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lapu5g01552 PK_Tyr_Ser-Thr 4.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01552 - - vra:106761555 1187.17