Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01546 ATGGCATCATCACATGATTTGGAAGATTGTTCCTCTGATCAAGCCTCTAGCATCTCTGTCACCTCACAAGACATTTGCCATAAATCTAGTGTTGAAGAAGGGAAAAATGATGAGGTGACAACAATGAGGAAGGATAAAGGTATCAAATTTGAACAACATCATCAGGTTTCCACTTCCACATCTCATATGGTGTTAGATTTTGTTAAGCTTTCTAATGATAAATCAATTTGTGGGTCGAATGTGGAATTGGATTTCTTCAATTCAATGAATGTGGGGGGTTCGTCTTCTAGGATGAATCACACTCAAGGGAGAGATGATAACATCAGAGAAGAAAAACCATTATCATCATCGTCACCGTCAGAGACTAAGATTTTTTCTTGCAACTTTTGTCAGAAAGAGTTTTCTTCTTCACAAGCATTAGGAGGACACCAAAATGCTCACAAACAAGAACGTGCTCTTGCAAAGCGTCGTCAAGGAATTGATGGTGGTACTTTTGGTTTAAGGTTTGGTCAAGGGATGATAAACTCTTCTTCTATTGGTTTGCCTGCAAATAGTGGAATTAGGATTATGGGAAGTGATTCAACTTTGAGGACACAAGATGATCGTGCTACTCCTAGACACAATATTTCATTCCTTGCACAATCTTCTACAATTCTTACAACCAAATCAAACTTGACTACACTGAATGTCATGGATAATGATGATCGCTCCAAAAGAGAAGGAACCTCAAACCGAACTTCAAGCCCTAGTTCTTCAGATGAAATTGATTTATCACTTAAACTTTAG 786 0.3804 MASSHDLEDCSSDQASSISVTSQDICHKSSVEEGKNDEVTTMRKDKGIKFEQHHQVSTSTSHMVLDFVKLSNDKSICGSNVELDFFNSMNVGGSSSRMNHTQGRDDNIREEKPLSSSSPSETKIFSCNFCQKEFSSSQALGGHQNAHKQERALAKRRQGIDGGTFGLRFGQGMINSSSIGLPANSGIRIMGSDSTLRTQDDRATPRHNISFLAQSSTILTTKSNLTTLNVMDNDDRSKREGTSNRTSSPSSSDEIDLSLKL* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01546 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 125 152 IPR013087 -
Lapu5g01546 261 SUPERFAMILY beta-beta-alpha zinc fingers 122 152 IPR036236 -
Lapu5g01546 261 MobiDBLite consensus disorder prediction 21 40 - -
Lapu5g01546 261 ProSitePatterns Zinc finger C2H2 type domain signature. 127 147 IPR013087 -
Lapu5g01546 261 MobiDBLite consensus disorder prediction 91 121 - -
Lapu5g01546 261 Gene3D Classic Zinc Finger 102 161 - -
Lapu5g01546 261 MobiDBLite consensus disorder prediction 231 257 - -
Lapu5g01546 261 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 11 170 IPR044246 GO:0009788
Lapu5g01546 261 MobiDBLite consensus disorder prediction 243 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01546 Lapu-Chr5 28696287 28697195 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01546 123 187 C2H2 Transcription Factor Family AT1G24625 52.308 3.54e-16 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu5g01546 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01546 - - gmx:102661483 252.677