Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01541 ATGATTAGCTTCATTCACACAGTAACAGCGATGGCTTCTGCAAGTAACTCCAATCCAAATCCATATCCATGGACCCCAAAGGATTGTTCTGAAGGAATCTGCAGCATCTACTGTCCCCAGTGGTGCTACATAGTCTACTCTCCTCCCCCTCCTTCACTCTTCCTTGGTGGTGATGGCGATGACGACCCTTCAGGATTTGAGTTCTCTCCTCTCATAGTTGCTGTGATTGGAATATTAGCCAGCACTTTCATCTTGGTCACATACTACACAATCATCTCAAGGTTCTGCAGGCGCAGCAGCATGCACACCAATGATCCACCAGAAGATGGGAGCAGTGAGCTGGCTCAGGTTTCTTCTTCTTCTTCTTCCAATTCTGGTTTGGATGAGGCTCTCATCAAGTCCATCACAGTTTGCAAGTACACCAAAGGTGGAGGGGTGGTGGAGGGTCATGATTGTTCAGTTTGTTTGAGTGAGTTTGAAGAGAATGAGAGCTTGAGATTGTTGCCAAAATGCAACCATGCTTTTCATCTCCCTTGCATTGATCCTTGGCTCAAATCTCATGCCACTTGCCCCTTGTGCCGTTCCACCATCACCATTGTTTGTCCAAATCCAGCCATGGAACCACCACCAAGAGTCATTGTCAATGCCTTGGAATACCAGCAAAGAAGTAGCCATGTTGTTGTTGTGGTTGTTCAGAGCTCCGAGCAACAGGAGAAGGTGGTAACTTTTGATTCTCACACTTTCAATGAGAGTCAAGGGTGA 762 0.4672 MISFIHTVTAMASASNSNPNPYPWTPKDCSEGICSIYCPQWCYIVYSPPPPSLFLGGDGDDDPSGFEFSPLIVAVIGILASTFILVTYYTIISRFCRRSSMHTNDPPEDGSSELAQVSSSSSSNSGLDEALIKSITVCKYTKGGGVVEGHDCSVCLSEFEENESLRLLPKCNHAFHLPCIDPWLKSHATCPLCRSTITIVCPNPAMEPPPRVIVNALEYQQRSSHVVVVVVQSSEQQEKVVTFDSHTFNESQG* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01541 253 ProSiteProfiles Zinc finger RING-type profile. 152 194 IPR001841 -
Lapu5g01541 253 PANTHER RING-H2 FINGER PROTEIN ATL16 64 238 IPR044600 GO:0016567|GO:0016740
Lapu5g01541 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 199 IPR013083 -
Lapu5g01541 253 SUPERFAMILY RING/U-box 146 203 - -
Lapu5g01541 253 CDD RING-H2_EL5-like 151 194 - -
Lapu5g01541 253 FunFam RING-H2 finger protein ATL54 127 200 - -
Lapu5g01541 253 MobiDBLite consensus disorder prediction 103 126 - -
Lapu5g01541 253 Pfam Ring finger domain 151 194 IPR001841 -
Lapu5g01541 253 SMART ring_2 152 193 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01541 Lapu-Chr5 28648276 28649505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01541 14 197 C3H Transcription Factor Family AT3G03550 52.632 8.70e-63 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01541 - - vun:114168871 411.379