Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lapu5g01541 | ATGATTAGCTTCATTCACACAGTAACAGCGATGGCTTCTGCAAGTAACTCCAATCCAAATCCATATCCATGGACCCCAAAGGATTGTTCTGAAGGAATCTGCAGCATCTACTGTCCCCAGTGGTGCTACATAGTCTACTCTCCTCCCCCTCCTTCACTCTTCCTTGGTGGTGATGGCGATGACGACCCTTCAGGATTTGAGTTCTCTCCTCTCATAGTTGCTGTGATTGGAATATTAGCCAGCACTTTCATCTTGGTCACATACTACACAATCATCTCAAGGTTCTGCAGGCGCAGCAGCATGCACACCAATGATCCACCAGAAGATGGGAGCAGTGAGCTGGCTCAGGTTTCTTCTTCTTCTTCTTCCAATTCTGGTTTGGATGAGGCTCTCATCAAGTCCATCACAGTTTGCAAGTACACCAAAGGTGGAGGGGTGGTGGAGGGTCATGATTGTTCAGTTTGTTTGAGTGAGTTTGAAGAGAATGAGAGCTTGAGATTGTTGCCAAAATGCAACCATGCTTTTCATCTCCCTTGCATTGATCCTTGGCTCAAATCTCATGCCACTTGCCCCTTGTGCCGTTCCACCATCACCATTGTTTGTCCAAATCCAGCCATGGAACCACCACCAAGAGTCATTGTCAATGCCTTGGAATACCAGCAAAGAAGTAGCCATGTTGTTGTTGTGGTTGTTCAGAGCTCCGAGCAACAGGAGAAGGTGGTAACTTTTGATTCTCACACTTTCAATGAGAGTCAAGGGTGA | 762 | 0.4672 | MISFIHTVTAMASASNSNPNPYPWTPKDCSEGICSIYCPQWCYIVYSPPPPSLFLGGDGDDDPSGFEFSPLIVAVIGILASTFILVTYYTIISRFCRRSSMHTNDPPEDGSSELAQVSSSSSSNSGLDEALIKSITVCKYTKGGGVVEGHDCSVCLSEFEENESLRLLPKCNHAFHLPCIDPWLKSHATCPLCRSTITIVCPNPAMEPPPRVIVNALEYQQRSSHVVVVVVQSSEQQEKVVTFDSHTFNESQG* | 254 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lapu5g01541 | 253 | ProSiteProfiles | Zinc finger RING-type profile. | 152 | 194 | IPR001841 | - | |
Lapu5g01541 | 253 | PANTHER | RING-H2 FINGER PROTEIN ATL16 | 64 | 238 | IPR044600 | GO:0016567|GO:0016740 | |
Lapu5g01541 | 253 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 113 | 199 | IPR013083 | - | |
Lapu5g01541 | 253 | SUPERFAMILY | RING/U-box | 146 | 203 | - | - | |
Lapu5g01541 | 253 | CDD | RING-H2_EL5-like | 151 | 194 | - | - | |
Lapu5g01541 | 253 | FunFam | RING-H2 finger protein ATL54 | 127 | 200 | - | - | |
Lapu5g01541 | 253 | MobiDBLite | consensus disorder prediction | 103 | 126 | - | - | |
Lapu5g01541 | 253 | Pfam | Ring finger domain | 151 | 194 | IPR001841 | - | |
Lapu5g01541 | 253 | SMART | ring_2 | 152 | 193 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lapu5g01541 | Lapu-Chr5 | 28648276 | 28649505 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lapu5g01541 | 14 | 197 | C3H Transcription Factor Family | AT3G03550 | 52.632 | 8.70e-63 | 199 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lapu5g01541 | - | - | vun:114168871 | 411.379 |