Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01540 ATGGCTCCCAAGAAGAAGAAACTCAATCCCCAGCAACCTTCCAAGTTCGGCATTCAGCACTTCTTCGATCGCGCCTCTCAGAAACACCACTACCTTCAACCCCACAACACCACCACCACTGCCGCCACCACCACCACCACCACCACCACCACCTCCACCACCACCACCTCCAATATCACCACCAACAATTCACCACAAGAACCGGTCGAAGTGTCTCCGCAGACGCGCTTCAACTTCTCACCTGGAATGTTGGTGAAGCAGAGCCAGGACGACGCCGTCAACGAGGTCACCTGGAAAATATCTCCCGTGAACGAGAGGCTTCAGGCAGTTTCCAAACACACGCCTGAAGTGATCAAAGCCTTGGCTGCTTCTTCCAAAGTGAACTTGTCGCCAATTTGCAATGACAGCGGCAAGGAGACTTGTCTGGATAAGGTTGCTTCGCCAACTCCCAAGGTGCCGTTGAGCTTCAAAAGGATGAACTCGGCCCTTGATGTGATTGGACAGAGTCCCTTCAGAACTCCACCGTCTTTGTCTTATCGCCCTGACAAGGTGCAGCGTGGAAAGGATATTGAACACAAGGGACCATGCGACCAGCCTTTATTAAGACAGAACAAAAAGGCATTGCTTGAACTCTTAGATCAAGTTGAAGATGCCATTGCGGTTGATGATGCTCCAGTTTGCAGTAACAACACTTATTCCTTTAAAATACCTCAAAATCAAATTGCCAATGACCTCCCTGTCAAAGTCAAACCTGCAGTAGAAAGGACCAAATCACATTTACCTAAAGAGGTTGTTGATGTCTTCTCCAGTTCTAATTATTTGGTTTTGGAGGTATCTGAACTTAGGTCTGCTGATTCATTTGCCGCTCAATGCTCATACAAGGTGCTACGTTTGCTAAATGAAGAAACTGGGGAAGAACGGGCTGTTAACTTACAGAATGAGTGGTCTTGTAGTGTAATTGCACCTGGAGATACCGTGCACATAATCGGTCAATTTGATGAAGGGGGGAATTGTGATATTGATCATGATAAAAACTTTTTGATTGTACACCCAGATATTCTAGTGTCTGGAACGCGGGTTGCTTCCAGTTTTAGTTGCCGGAGGAGAACTGTCTTAGACGAGAGGTTGAAAACCAATGATTACTCAACTGCGGCATTAGCTGGAACCATGCTGCACCAAATTTTCCAGGCTGGGCTTACGAAAGACCATCCTACAGTAACTTTCATGGAAGATTATGCAGAAGTGGTATTAAAGAAAAACATTGAAAGTTTGTATGCATGTGGAGTAAATGAAAATGATGTTCGCAAAACCATGAGAGATGCTATTCCTAGAATATTAAGTTGGATCAGGCGGTTTAAAAATATGGAGGAAAGAAAGGACCCAAATGTCAAATTTGGATTTGATAATGGGCCAAAGAATGTTGGCATATCTGAGATAATTGATATTGAAGAGATGGTGTGGGCTCCAAAATATGGTTTAAAAGGGATGATTGATGCTTCGGTTAGAGTTAAAATTCAATCACAAAAAGATGAACAGGAGGAAAAGATCATGCCAGTAGAGTTCAAAACTGGAAAAACACCAAACAGCCAGTCGTCAGTTGAACACAGTGCCCAAGTAATTTTGTACACTCTCTTGATGTCTGAAAGGTATCAGAGGACTGTTGATTCTGGTCTTCTATATTATCTCCAATCTGATCAGACACAGGGCATTGTGGTTCAAAGGTCCGACTTAACTGGGCTAATAATGCAACGAAATGAACTAGCAAGTGATATTCTTAAGGCATTGACTCTACAACAACTGCCTCCAATGTTACAGAGTCCTAGCATTTGCAGAGGTTGTCGCCATCTTAATGTTTGTAGCATTTATCACAAGGCAAATGGTGGAAGCACAGAGAGCAGTGGGTTGGGTGAAGTTTTTGATTCTCTCACTAATCACATGACTTCTTTGCATTCTAAGTTTCTCCACCAATGGGATCGCTTGATTGACTTAGAAGCTAAAGAGACTGAGATTTTAAAGAAAGAGGTGTGGCAATCCCATAGTTCAAAGAGTTCAAACAATAGTAGTCTTTCTTCTATTGTTCTTGATGACTCACAAGGAATACCTCTTGAGAAATCTTTCAAAGATAATCAATTCACTTATCGTTTCGTGCAACAAGATTCTTCTTCTAACCTCTCTGAAGTTTCTGATGTATCTTCTAGTGCCTCATTGAAAAATGATTTAGATTCCACACTTCGAAGTGGAGATCATGTGATACTGGGTAATCAATCTAACCATCAAATTATTGCTAAAGGGGTGATATCTGATATTAGTCCGATCCATGTATCTGTTTCCTTTTCTAAGCGTTTAAGAATTCCTGGGAGTTCTTCCACCGTACATGATCTCATTCAGCAGGTCTGGAGAATTGACAAGGATGAAGCTGTTACTTCCTTTGCAATTATGCGGTTTAATCTTGTACAGCTTTTTCTACAGAATGACCGAAGTGTTCATTTGCGGCGGATGATTGTTGATCTTGAGGCTCCTAGATTTGACAGTGGATCTATAGTTAGCCAGGATCCTGCAATATCCTATGTTTGGTCAGAGAAGAGTTTAAATTATGACCAACGTAGAGCAATTCTCAAGATACTTACTGCAAAAGATTATGCACTTATATTAGGGATGCCTGGAACAGGGAAAACGTCCACATTAGTCCATGCTGTGAAAGCCTTGTTGATTAGAGGGACATCCATTTTGCTAACCGCCTATACAAATTCTGCTGTTGATAATTTAGTCATCAAATTAAAAGCACAGGGGATTGATTTTGTAAGAATTGGAAGACGCGAAGTAGTGAATGAGGTGGTCAGAGAACACTGCCTCTCAGGAAGTGTACAAGGTGTCGAAGATATCAAAAAAAGGTTGGAACAAGTCAAAGTTGTCGCAGTTACTTGTCTTGGCATTTCTAGTCCCTTGCTTGCCAACACAAGGTTTGATGTATGCATTATGGATGAAGCTGGACAAACAACTTTACCAGTGTCCTTGGGTCCTCTAACATTTGCTTCGATGTTTGTACTTGTTGGGGATCATTATCAACTGCCCCCACTAGTCCAAAGTACAGAAGCCCGAGAGAATGGTATGGGGATAAGCTTGTTTTGTAGGCTATCAGAAGCACATCCACAGGCTATTTTAGCATTACAGAGTCAGTATCGTATGTGTCAGGACATTATGGACCTTTCAAATGCCTTGATTTATGGTGACAGATTGAGGTGTGGTTCAGTTGAGGTAGCTAATGCAAAACTCGAGTTTTCAGGCTTAAGCTGTGACTTGCCTTGGCTAGAACATGTTTTGAATCCTCGAAGACCTGTGATATTTATTGATACCGACAAGTTGCCCGCATTAGAGGCAAGAGATCAGAAGATCGTAAATAACCCTATTGAAGCTCAAATAATTGCTGAGATTGCAAAGGAATTAATTAAAAATGGAATCAGAAAAGAACACATTGGCATTATTACTCCATATAATTCGCAGGCAAACGTCATCCATCATGCTGCTTGCATGACTTCCTTGGAGATACATACCATTGACAAATACCAGGGTAGAGATAAGGACTGTATATTATTATCTTTTGTAAGGTCTACCGAAAACCCAGTAAGCTGTGCTGCTTCTCTGCTTGGAGACTGGCACAGGATAAATGTGGCTATTACTCGTGCTAAGAAAAAGTTGATCATGGTAGGGTCTCGGAGAACTCTATCAAAGGTTCCTCTTCTGAAACTTCTTATTAGGAAAGTTGAGGAGCAATCTGGAATTTTAAGTTTGTCTAAGAAGGATATGTATGGAAAAGGTGGGCTCAAGAGATGTTCCCAACTTAGATGA 3846 0.4181 MAPKKKKLNPQQPSKFGIQHFFDRASQKHHYLQPHNTTTTAATTTTTTTTTSTTTTSNITTNNSPQEPVEVSPQTRFNFSPGMLVKQSQDDAVNEVTWKISPVNERLQAVSKHTPEVIKALAASSKVNLSPICNDSGKETCLDKVASPTPKVPLSFKRMNSALDVIGQSPFRTPPSLSYRPDKVQRGKDIEHKGPCDQPLLRQNKKALLELLDQVEDAIAVDDAPVCSNNTYSFKIPQNQIANDLPVKVKPAVERTKSHLPKEVVDVFSSSNYLVLEVSELRSADSFAAQCSYKVLRLLNEETGEERAVNLQNEWSCSVIAPGDTVHIIGQFDEGGNCDIDHDKNFLIVHPDILVSGTRVASSFSCRRRTVLDERLKTNDYSTAALAGTMLHQIFQAGLTKDHPTVTFMEDYAEVVLKKNIESLYACGVNENDVRKTMRDAIPRILSWIRRFKNMEERKDPNVKFGFDNGPKNVGISEIIDIEEMVWAPKYGLKGMIDASVRVKIQSQKDEQEEKIMPVEFKTGKTPNSQSSVEHSAQVILYTLLMSERYQRTVDSGLLYYLQSDQTQGIVVQRSDLTGLIMQRNELASDILKALTLQQLPPMLQSPSICRGCRHLNVCSIYHKANGGSTESSGLGEVFDSLTNHMTSLHSKFLHQWDRLIDLEAKETEILKKEVWQSHSSKSSNNSSLSSIVLDDSQGIPLEKSFKDNQFTYRFVQQDSSSNLSEVSDVSSSASLKNDLDSTLRSGDHVILGNQSNHQIIAKGVISDISPIHVSVSFSKRLRIPGSSSTVHDLIQQVWRIDKDEAVTSFAIMRFNLVQLFLQNDRSVHLRRMIVDLEAPRFDSGSIVSQDPAISYVWSEKSLNYDQRRAILKILTAKDYALILGMPGTGKTSTLVHAVKALLIRGTSILLTAYTNSAVDNLVIKLKAQGIDFVRIGRREVVNEVVREHCLSGSVQGVEDIKKRLEQVKVVAVTCLGISSPLLANTRFDVCIMDEAGQTTLPVSLGPLTFASMFVLVGDHYQLPPLVQSTEARENGMGISLFCRLSEAHPQAILALQSQYRMCQDIMDLSNALIYGDRLRCGSVEVANAKLEFSGLSCDLPWLEHVLNPRRPVIFIDTDKLPALEARDQKIVNNPIEAQIIAEIAKELIKNGIRKEHIGIITPYNSQANVIHHAACMTSLEIHTIDKYQGRDKDCILLSFVRSTENPVSCAASLLGDWHRINVAITRAKKKLIMVGSRRTLSKVPLLKLLIRKVEEQSGILSLSKKDMYGKGGLKRCSQLR* 1282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01540 1281 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 805 954 - -
Lapu5g01540 1281 MobiDBLite consensus disorder prediction 35 72 - -
Lapu5g01540 1281 Gene3D - 738 804 - -
Lapu5g01540 1281 Gene3D - 1060 1267 IPR027417 -
Lapu5g01540 1281 FunFam DNA replication helicase 1060 1272 - -
Lapu5g01540 1281 PANTHER DNA2/NAM7 HELICASE FAMILY 197 1256 IPR045055 -
Lapu5g01540 1281 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 958 1059 - -
Lapu5g01540 1281 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 862 1246 IPR027417 -
Lapu5g01540 1281 CDD DNA2_N-like 356 591 - -
Lapu5g01540 1281 Pfam DNA replication factor Dna2 301 503 IPR014808 -
Lapu5g01540 1281 Pfam AAA domain 863 957 IPR041677 GO:0004386
Lapu5g01540 1281 Pfam AAA domain 962 1029 IPR041677 GO:0004386
Lapu5g01540 1281 Gene3D - 805 956 IPR027417 -
Lapu5g01540 1281 Gene3D - 962 1059 IPR027417 -
Lapu5g01540 1281 CDD SF1_C_Upf1 1062 1255 IPR047187 -
Lapu5g01540 1281 Pfam Domain of unknown function DUF83 509 620 IPR022765 -
Lapu5g01540 1281 Pfam AAA domain 1039 1238 IPR041679 -
Lapu5g01540 1281 FunFam DNA replication helicase Dna2 467 620 - -
Lapu5g01540 1281 Gene3D - 356 620 IPR011604 -
Lapu5g01540 1281 CDD DEXXQc_DNA2 862 1061 IPR026851 GO:0017116
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01540 Lapu-Chr5 28624879 28644619 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01540 1 1003 Core DNA Replication Machinery Family AT1G08840 54.674 0.0 1070
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01540 K10742 - gmx:100799415 2042.31