Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01532 ATGTTCGCGGCGTCTCCGCCACCTTCCGCCGCTGCCACTACCGCCGGCGTGGGTCTCGGCTACGGCATTGCCATAGCTGTCAGCATCCTCGTCCTCGTCTCCTCCATCATGCTCGCCTCCTACGCCTGTGTCCGCTTCAAATCCAACTCTCGTCGCACTCACAGCAACACTCATTACGACCAAACGGAACAAAATAACAACATCCATAACTCCGGTGAGCCCGGTCCCGTCGTCCTGGGCCTGGAAAAGCCCGCCATCGAGGCCTACCCGAAGATCGTGGTCGGAGAGAGCGTCTGCCTCCCCAGGCCCAACGATACCGGTCCCTGCGCCATCTGTCTCTGCGAGTACCTTCCCAAGGATACCGTACGCTGCGTTCCGAGCTGCCACCACTGTTTCCACGCGGACTGCGTGGACGCGTGGCTGAGGATGAGTGCCACGTGTCCGCTCTGCCGGAACTCTCCCGCGCCGTCGCCGTTGCCGTCACCGACGCCGCTGTCGGAACTCGTTCCACTGGCTTTCCACGCCAGGTGGTCCTCCGTGACATGGGTTGCCAACATGAGGCTTGGTTGA 570 0.6211 MFAASPPPSAAATTAGVGLGYGIAIAVSILVLVSSIMLASYACVRFKSNSRRTHSNTHYDQTEQNNNIHNSGEPGPVVLGLEKPAIEAYPKIVVGESVCLPRPNDTGPCAICLCEYLPKDTVRCVPSCHHCFHADCVDAWLRMSATCPLCRNSPAPSPLPSPTPLSELVPLAFHARWSSVTWVANMRLG* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01532 189 SMART ring_2 109 150 IPR001841 -
Lapu5g01532 189 Pfam Ring finger domain 109 151 IPR001841 -
Lapu5g01532 189 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Lapu5g01532 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 156 IPR013083 -
Lapu5g01532 189 PANTHER RING-H2 FINGER PROTEIN ATL67 9 175 IPR044289 GO:0016567|GO:0016740
Lapu5g01532 189 CDD RING-H2_EL5-like 109 151 - -
Lapu5g01532 189 MobiDBLite consensus disorder prediction 54 74 - -
Lapu5g01532 189 SUPERFAMILY RING/U-box 108 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01532 Lapu-Chr5 28563455 28565879 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01532 15 176 C3H Transcription Factor Family AT5G07040 60.494 1.93e-62 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01532 - - vra:106761828 298.901