Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01530 ATGGCATCTAGCTCAATGTCTTCCACTGGCTCATGGAGTGCCAAGGACAACAAAGCCTTTGAAAGGGCTCTTGCTGTTTATGACAAGGACACTCCTGACCGGTGGTACAATGTTGCTAAGGCTATTGGTGGAGGGAAGACTCCAGAAGAAGTGAAGAGGCATTATGAACTTCTCCTCAGGGATGTTAGGCACATTGAATCAGGACAAGTGCCATTCCCAAATTACAAACAAAGTGGAGGGTCTGAAGAGGAGAAAAGGTAG 261 0.4674 MASSSMSSTGSWSAKDNKAFERALAVYDKDTPDRWYNVAKAIGGGKTPEEVKRHYELLLRDVRHIESGQVPFPNYKQSGGSEEEKR* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01530 86 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 83 IPR044636 GO:0003700
Lapu5g01530 86 SUPERFAMILY Homeodomain-like 10 67 IPR009057 -
Lapu5g01530 86 CDD SANT 18 59 IPR001005 -
Lapu5g01530 86 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Lapu5g01530 86 SMART sant 8 61 IPR001005 -
Lapu5g01530 86 Gene3D - 2 72 - -
Lapu5g01530 86 ProSiteProfiles Myb-like domain profile. 4 59 IPR001005 -
Lapu5g01530 86 FunFam Transcription factor SRM1 4 72 - -
Lapu5g01530 86 ProSiteProfiles SANT domain profile. 7 63 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01530 Lapu-Chr5 28544832 28545374 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu5g01530 Myb_DNA-binding 2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01530 - - gmx:100804396 166.392