Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01522 ATGGCCACTGCAAGGACTGTGAAGGACGTTTCTCCCCATGAGTTTGTCAAGGCTTACTCTTCTCACCTAAAGCGATCTGGCAAGATGGAGCTGCCTGAATGGACTGATATTGTCAAAACAGCAAGATTTAAGGAGTTGGCTCCCTATGATCCTGACTGGTACTATGTTAGAGCTGCTTCCATGGCAAGAAAGATCTACTTGAGAGGAGGACTTGGTGTTGGTGCATTTCAGAGGATTTATGGCGGGAGCAAGAGGAATGGTAGCCGTCCTCCTCATTTCTGCAAGAGCAGTGGTGCCATTGCCCGTCACATTCTTCAGCAGTTGCAAACCATGAACATCATTGAACTGGACACCAAGGGTGGCAGGAGAATCACTTCAAGTGGCCGGCGGGATCTTGATCAAGTTGCCGGACGCATTGTGGTTGCACCTTGA 432 0.4931 MATARTVKDVSPHEFVKAYSSHLKRSGKMELPEWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFQRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQTMNIIELDTKGGRRITSSGRRDLDQVAGRIVVAP* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01522 143 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Lapu5g01522 143 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lapu5g01522 143 PANTHER 40S RIBOSOMAL PROTEIN S19 2 139 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lapu5g01522 143 SUPERFAMILY "Winged helix" DNA-binding domain 6 141 IPR036390 -
Lapu5g01522 143 FunFam 40S ribosomal protein S19 2 143 - -
Lapu5g01522 143 Gene3D - 1 142 IPR036388 -
Lapu5g01522 143 Pfam Ribosomal protein S19e 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01522 Lapu-Chr5 28458760 28461210 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01522 1 143 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 87.413 9.63e-96 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01522 K02966 - gmx:100499800 288.115