Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01512 ATGTCTAAGAGGGTTCTCTGTAAGTTCTTTGCTCATGGAGCCTGTCTGAAAGGGGATCATTGTGAATTTTCTCATGACTGGAAAGATCCTCCAAATAATATTTGCACATTTTATCAGAAAGGAACCTGTGCTTATGGTAGTCGCTGCAGATATGAACATATCAAAACTTCTCAAGCACAATCTTCCATTCCATCTTCTTCAGTAATTGAACACCATACACTGGTTTCAGATACTGGTGCTTTTGGAAATATTATAAGTACAAATGGTGTTGGTACAGCTGCAGAGTTTTCTCTTTCCAGTAGTCCATACATTCTTCCGAGTGAACCGGCTTGGAATCATGAAGTGGCATGGAATCATGAAGCGGCTTGGAATCACGAACTGGCTTGGAATCCAGAATTTGAGTATTATGAAATTTTAGGGGAAGACAATGTTGGTCAATCCATAATCACTTCACCTTCTGAGCTTTCAATCTGTTCATTTGCTGCTGCACCTTCTGAGATTTCAATCTGTTCATTTGCTGCTGCTGGCAACTGTCCACGAGGGGAAAAATGTCCTCATATTCATGGGGATCTGTGTCCCACCTGTGGAAAGCATTGCCTGCATCCTTTCCGACCTGAGGAAAGAGAAGAGCATATGAAGAATTGTGAAAATAAGCATAAGCACCTTGAGGCATTGAAACGAAGTCAAGAAATTGAATGCAGTGTTTGTCTGGAGAAGGTTCTGTCAAAGTCTACAGCAGCTGAACGTAAGTTTGGGCTGCTATCTGAATGTGATCATCCATTTTGCATATCCTGTATTAGGAATTGGCGCAGTAGTAACCCAACATTGGGGATGGATGTTAATAGTACATTGAGGGCTTGTCCAATTTGTCGTAAGCTATCGTACTTTGTCATTCCAAGTGTCATTTGGTACTCGACAACTGAAGAGAAACAAGAAATCATTGACAACTACAAGGCAAAGCTCAAGTCAATTGACTGCAAGCACTTTGACTTTGGGGATGGTAACTGCCCTTTTGGAACTAGTTGTTTCTACAAGCATGCATATCGAGATGGCCGTGTGGAGCAGGTAGTATTGCGACATCTAGGGGCTGCTGATGGAAATACCGTAATTGCAAAAGACATCAGGTTGTCGGATTTCCTTTCTAACATGCATTTAAGATGA 1161 0.416 MSKRVLCKFFAHGACLKGDHCEFSHDWKDPPNNICTFYQKGTCAYGSRCRYEHIKTSQAQSSIPSSSVIEHHTLVSDTGAFGNIISTNGVGTAAEFSLSSSPYILPSEPAWNHEVAWNHEAAWNHELAWNPEFEYYEILGEDNVGQSIITSPSELSICSFAAAPSEISICSFAAAGNCPRGEKCPHIHGDLCPTCGKHCLHPFRPEEREEHMKNCENKHKHLEALKRSQEIECSVCLEKVLSKSTAAERKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVIPSVIWYSTTEEKQEIIDNYKAKLKSIDCKHFDFGDGNCPFGTSCFYKHAYRDGRVEQVVLRHLGAADGNTVIAKDIRLSDFLSNMHLR* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01512 386 ProSiteProfiles Zinc finger C3H1-type profile. 164 191 IPR000571 GO:0046872
Lapu5g01512 386 SUPERFAMILY CCCH zinc finger 3 26 IPR036855 GO:0046872
Lapu5g01512 386 CDD RING-HC_MKRN 231 291 - -
Lapu5g01512 386 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Lapu5g01512 386 SUPERFAMILY CCCH zinc finger 32 53 IPR036855 GO:0046872
Lapu5g01512 386 Pfam CCCH-type zinc finger 34 53 IPR041367 -
Lapu5g01512 386 Pfam CCCH-type zinc finger 6 26 IPR041367 -
Lapu5g01512 386 ProSitePatterns Zinc finger RING-type signature. 257 266 IPR017907 -
Lapu5g01512 386 SMART ring_2 233 290 IPR001841 -
Lapu5g01512 386 Gene3D - 1 31 - -
Lapu5g01512 386 ProSiteProfiles Zinc finger RING-type profile. 233 291 IPR001841 -
Lapu5g01512 386 ProSiteProfiles Zinc finger C3H1-type profile. 1 28 IPR000571 GO:0046872
Lapu5g01512 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 325 IPR013083 -
Lapu5g01512 386 Gene3D - 32 79 - -
Lapu5g01512 386 SMART c3hfinal6 1 27 IPR000571 GO:0046872
Lapu5g01512 386 SMART c3hfinal6 165 190 IPR000571 GO:0046872
Lapu5g01512 386 SMART c3hfinal6 320 348 IPR000571 GO:0046872
Lapu5g01512 386 SMART c3hfinal6 30 55 IPR000571 GO:0046872
Lapu5g01512 386 ProSiteProfiles Zinc finger C3H1-type profile. 320 349 IPR000571 GO:0046872
Lapu5g01512 386 Coils Coil 212 232 - -
Lapu5g01512 386 PANTHER MAKORIN-RELATED 5 369 IPR045072 GO:0000209|GO:0061630
Lapu5g01512 386 Pfam RNA-binding, Nab2-type zinc finger 325 347 - -
Lapu5g01512 386 Pfam RNA-binding, Nab2-type zinc finger 169 188 - -
Lapu5g01512 386 Pfam Zinc finger, C3HC4 type (RING finger) 233 290 IPR018957 GO:0046872
Lapu5g01512 386 SUPERFAMILY RING/U-box 222 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01512 Lapu-Chr5 28379812 28387366 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu5g01512 zf-C3HC4 2.2e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01512 K15687 - gmx:100787817 672.159