Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01511 ATGTCCTACAGGGTTTGCAAGTTCTATGCCCGTGGAGCGTGTTTGAAAGGGGATCAATGTGATTTTGTTCATGAGATAAAGGATGGTGTAAGTTGTAATATTTGTAGCTATTATCAAAGAGGATTATGTGCTTATGGTAGTAGATGTAGATATAAGCATGTCAAAGCTTCTGAAGCATCGTCTTCAGCAAATGGACGTCATTCTCCTGTTTCCGATTCTGTGGTGAATCATACCGCCAAAGGAACATCAAGTTGGGTTCCAAAGACCGCAAAGTCATCTCTATCAGACAAGTGTGCCAGGAGTTCACAACATAAGAATCTGGTCTCTCCTGGAAATGATGTTGGTCAGTCCAGTTCTAGTAGTGCTACACCATCTGAACTTTTGTTTTGTTCATTTGCTGCTGCCAATTGCCCCCTTGGAAATAAATGTACTCGTGTTCATGGAAATCGATGTTTATACTGTAGAAAATTTTGCTTACATCCTACTGATATAGAGGAGAGAGAAAATCATTTGGGAACTTGTGAGAAGAAGGAGAAATACCTTCAGGCTTTGAATGATAGTCAAGAAGTAGAATGCAATGTTTGTTTGGAGCGTGTTCTTTCCAAGCCCAAACCATCTGATTGTAAGTTTGGGGTGCTTCCTGAATGTGATCATGCTTTTTGTTTATCCTGTATCCGCAATTGGCGTAATAGTGCCCCAACCTCGGGATCGGACTTGAGTAATAATGACACTGCTAATACAGTGAGAACATGTCCTGTTTGTCGCAAACTATCATATTTTGTCATTCCAAGTGGTATTTGGTATTCTACTAAGGAAGAAAAACAGGAAATTATTGACAACTACAAGGCAAACTGCAAACTAATTAATTGCAAGCATTTTAACTTCGGAAATGGGAATTGTCCGTTTGGGGCGAGTTGCTTCTACAAGCACACTGTGAAGCCTGGCTCATACACATGGATACATCGCAGGCCACCACCACCACCACCACAGCAGAGACAAAACAATTTTAATATGCATGACATGTTGGACATGCTGAGCGATGTTGATTTAACAAGTGCAGAATATCTTTCTATCATGAGGGATTCGGAGATTTTCGACGAGATGGATCCGTTTGGGATGATGGATATATCTGATAGGCTTGCTGGTGAATCAGGTCCTTGTTTGGGCCCTTTTGATTCTGATGACGAGGCCATGGATTTTTTTCAGATGGCTGCATTGTCGGAAGCACTGGTTTCTGGTGTTGATGATTTTGGTCCTGAAGATTTTGATCATGAAGATTTCAACCCTATGGAGGCTGCCTTGTTATCAATGATGATGCATTCTAATATAGATGACGATGAAGATGAATACAGTGATGATTACTACTAG 1368 0.4086 MSYRVCKFYARGACLKGDQCDFVHEIKDGVSCNICSYYQRGLCAYGSRCRYKHVKASEASSSANGRHSPVSDSVVNHTAKGTSSWVPKTAKSSLSDKCARSSQHKNLVSPGNDVGQSSSSSATPSELLFCSFAAANCPLGNKCTRVHGNRCLYCRKFCLHPTDIEERENHLGTCEKKEKYLQALNDSQEVECNVCLERVLSKPKPSDCKFGVLPECDHAFCLSCIRNWRNSAPTSGSDLSNNDTANTVRTCPVCRKLSYFVIPSGIWYSTKEEKQEIIDNYKANCKLINCKHFNFGNGNCPFGASCFYKHTVKPGSYTWIHRRPPPPPPQQRQNNFNMHDMLDMLSDVDLTSAEYLSIMRDSEIFDEMDPFGMMDISDRLAGESGPCLGPFDSDDEAMDFFQMAALSEALVSGVDDFGPEDFDHEDFNPMEAALLSMMMHSNIDDDEDEYSDDYY* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01511 455 SMART c3hfinal6 284 312 IPR000571 GO:0046872
Lapu5g01511 455 SMART c3hfinal6 31 55 IPR000571 GO:0046872
Lapu5g01511 455 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Lapu5g01511 455 SMART c3hfinal6 125 149 IPR000571 GO:0046872
Lapu5g01511 455 PANTHER MAKORIN-RELATED 4 349 IPR045072 GO:0000209|GO:0061630
Lapu5g01511 455 Pfam CCCH-type zinc finger 34 53 IPR041367 -
Lapu5g01511 455 ProSitePatterns Zinc finger RING-type signature. 216 225 IPR017907 -
Lapu5g01511 455 MobiDBLite consensus disorder prediction 60 88 - -
Lapu5g01511 455 Pfam RNA-binding, Nab2-type zinc finger 6 24 - -
Lapu5g01511 455 Pfam RNA-binding, Nab2-type zinc finger 290 310 - -
Lapu5g01511 455 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Lapu5g01511 455 CDD RING-HC_MKRN 190 255 - -
Lapu5g01511 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 286 IPR013083 -
Lapu5g01511 455 ProSiteProfiles Zinc finger RING-type profile. 192 255 IPR001841 -
Lapu5g01511 455 Gene3D - 2 68 - -
Lapu5g01511 455 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Lapu5g01511 455 Pfam Zinc finger, C3HC4 type (RING finger) 192 254 IPR018957 GO:0046872
Lapu5g01511 455 SUPERFAMILY RING/U-box 183 261 - -
Lapu5g01511 455 ProSiteProfiles Zinc finger C3H1-type profile. 34 56 IPR000571 GO:0046872
Lapu5g01511 455 SMART ring_2 192 254 IPR001841 -
Lapu5g01511 455 ProSiteProfiles Zinc finger C3H1-type profile. 284 313 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01511 Lapu-Chr5 28369512 28374982 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu5g01511 zf-C3HC4 1.5e-06 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01511 K15687 - gmx:100788886 772.696