Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01508 ATGACAGATCCTCACTGCAATTTATACGCTGGAACCTTCAACTTCATGCCCCTTTATTCTCACCACTCTTCTTTCACTTCTCAACCAAACCATTTTTCTTCCTACCCTCTTTCGTGTTCAAACACCACTAACACCACCAACAACACCTTCTCCATTGTTCAATCCGAAACCTCTTCCTCAGCTTGTGCAGCTCCTCCTTCTCCTCCTCTCAGAGAAGCCCTTCCTCTCATAAGTCTCATAAAGCAGAAGGAGAATGAACCCTCCAACGGTGGTGGCGAAGCTGAAGAGGAAGGGCACAAGAAAAGAGACATGGATGAGACCCTTTTGACTGAAGATGGTGATGATGAAACTGTGGCAGTAGCACTGCACATAGGGCTTCCTAGCGTGGCTGCTTCTGATCTTCTGGGATCGGGGAAGATCTCGGCTTGTGCACAAATGGGTGAGAAAGGGGAAGTGAGTGTGATTTCTGGACACCCTTTGGATAGATTAAACAAGGTTCAGTATTGGATTCCCACCCCTTCTCAGATTCTCATTGGTCCTACTCAGTTTTTATGTTCTGTGTGCTCCAAGAGCTTCAACAGATATAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATATAGAAAGGGGCCTGATTCTCTAAAAGGAACACAACCATCAGCAATGCTAAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCTAGGCCTCTCAAGGATTTCAGAACCCTTCAAACACATTACAAGAGAAAACATGGTATTAAACCCTACATGTGCAGAAAATGTGACAAAACCTTTGCAGTGAAGGGTGATTGGAGGACACATGAGAAGAACTGTGGCAAAATATGGTACTGTTTATGTGGGTCTGATTTCAAACACAAAAGATCTCTAAAAGATCACATAAAGGCCTTTGGCCATGGCCATGGAGCTGTTGACATTGATTGCATGCAGGAAGATGAAGCTGCCTCAGAAATTGAACATGATGGGGATAGCTCAATGTGA 1032 0.4467 MTDPHCNLYAGTFNFMPLYSHHSSFTSQPNHFSSYPLSCSNTTNTTNNTFSIVQSETSSSACAAPPSPPLREALPLISLIKQKENEPSNGGGEAEEEGHKKRDMDETLLTEDGDDETVAVALHIGLPSVAASDLLGSGKISACAQMGEKGEVSVISGHPLDRLNKVQYWIPTPSQILIGPTQFLCSVCSKSFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPSAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCDKTFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGHGHGAVDIDCMQEDEAASEIEHDGDSSM* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01508 343 PANTHER ZINC FINGER PROTEIN WIP2 40 336 IPR043584 GO:0003700|GO:0010468
Lapu5g01508 343 SUPERFAMILY beta-beta-alpha zinc fingers 251 287 IPR036236 -
Lapu5g01508 343 SUPERFAMILY beta-beta-alpha zinc fingers 176 205 IPR036236 -
Lapu5g01508 343 SMART c2h2final6 267 287 IPR013087 -
Lapu5g01508 343 SMART c2h2final6 183 205 IPR013087 -
Lapu5g01508 343 SMART c2h2final6 293 316 IPR013087 -
Lapu5g01508 343 MobiDBLite consensus disorder prediction 82 103 - -
Lapu5g01508 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 183 210 IPR013087 -
Lapu5g01508 343 MobiDBLite consensus disorder prediction 88 103 - -
Lapu5g01508 343 Gene3D Classic Zinc Finger 236 322 - -
Lapu5g01508 343 ProSitePatterns Zinc finger C2H2 type domain signature. 185 205 IPR013087 -
Lapu5g01508 343 FunFam Zinc finger protein WIP2 236 318 - -
Lapu5g01508 343 Gene3D Classic Zinc Finger 182 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01508 Lapu-Chr5 28353479 28355790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01508 43 336 C2H2 Transcription Factor Family AT1G51220 57.051 1.26e-115 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu5g01508 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01508 - - vra:106761045 643.269